AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00780 ATGACGGCGAAGAAGAGATCTGTAGCTGTTGCTTCGAGGCGCCAAATTCCGCCATTTGTTTCTAAGTTTGTGATCTCATTGTTGATACTCTTTTGTTTCGTCGCCTTTCTCGGACTCTTCTCTCAATTTAAGCTTCAATCGTCGTCCGTACCTACCGGATTTTATTTTGACGACTTCCGTCTCGAAGATTATCGTATGAAGATTGCTTTCCTTTTTCTTGTTCGAGACAATCTTCCTCTTGATTTCCTTTGGCACAACTTCTTTAAGAATGCAGATCCAGAGAATTTCACAATTTACATACACTCGAAGCCTGGTTTTGTGTTTGATGAGTCAGTTACCAGATCAGTCTTCTTCTACAACCGGCAGTTGGAAAACAGTGTGGAGGTGGGTTGGGGTAAGCCAACTATGATTGAAGCAGAGAAGCTGCTGTTCAAGGCTGCCCTTAATGATCCAAGCAATCAGATACTTGTTCTCCTCTCTGACAGCTGTGTACCACTATATGATTTCCGTTACATATACACATATCTCATGTCGTCTCCAAGAAGCTTCGTCGACAGCTTCATCGATGTCAAGGAAAATCGCTACAATCCAGAGATGTCCCCTGACATACCTGAAGACAAATGGCGGAAAGGATCCCAGTGGATCACATTGGTCAGAAGGCATGCGGAGATGGTTGCATATGATCATGTTGTTTTCCCAATCTTTGAGAAACACTGCAAGCGGCGACCACTTCTAGACTTGAGCAAGGGAAACGAGTCTCTTAAAGAACAGCAGCAACACAATTGCATCCCAGATGAACATTATGTTCCCACCTTACTTGCAATGCGGGGTGTTGAAGATGAATTGGAGCGAAGAACATTAACCTATTCATTATGGAACCAGTCTACAGAAACAATGAACACACAAGCCTGGCATCCTGTAACATTTGGTTATGCAAGTGCCAGCCAGAAACATATACAAGATATCAAGGATATCAACCATGTTCATTTCGAGTCTGAGAATCGGACCGAATGGTGTGGTACTAAATCTAGTAGCGGTTCTTGTTACTTGTTTGCTAGGAAGTTCTCGCGTGGTGCAGCTATGCGGCTTCTGACCAACGGGGTGGTTGGTCCGTATGATCCTAACACGTTGTTCCAAGACCTGACATAG 1149 43.95 MTAKKRSVAVASRRQIPPFVSKFVISLLILFCFVAFLGLFSQFKLQSSSVPTGFYFDDFRLEDYRMKIAFLFLVRDNLPLDFLWHNFFKNADPENFTIYIHSKPGFVFDESVTRSVFFYNRQLENSVEVGWGKPTMIEAEKLLFKAALNDPSNQILVLLSDSCVPLYDFRYIYTYLMSSPRSFVDSFIDVKENRYNPEMSPDIPEDKWRKGSQWITLVRRHAEMVAYDHVVFPIFEKHCKRRPLLDLSKGNESLKEQQQHNCIPDEHYVPTLLAMRGVEDELERRTLTYSLWNQSTETMNTQAWHPVTFGYASASQKHIQDIKDINHVHFESENRTEWCGTKSSSGSCYLFARKFSRGAAMRLLTNGVVGPYDPNTLFQDLT 382
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00780 382 PANTHER CORE-2-I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 63 364 IPR044174 GO:0016757(InterPro)
Armi1g00780 382 Pfam Core-2-I-Branching enzyme 68 322 IPR003406 GO:0016020(InterPro)|GO:0016757(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00780 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr18:2232377 Armi1g00780 Armi-Chr1:19388673 dispersed
Armi Armi-Chr1:19388673 Armi8g00705 Armi-Chr8:19246291 dispersed
Armi Armi-Chr1:19388673 Armi15g01593 Armi-Chr15:75761024 wgd
Armi Armi-Chr1:19388673 Armi18g00507 Armi-Chr18:13877943 wgd