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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00814 ATGATTTACCTCTTCTTTTCGCTTTTGTTCGTCGAAATGGTCACGATTCTCTTACTTTTGTTCAAAACCCCACTTCGAAAGCTTTTGATTATCGGAATAGATCGTATGAAACGAGGTAGGGCTCCATTGGTTGTTAAATCAGTCGGCGCCACCGTCTTCGTCATCATGATGTACAACGTTTACAGTGTAACGGAAATCCAGAGCCGTCCCGCCGACTCCCTTAATCCCACCGATCAAATCATACTCGCTTACCATATGCTCGAAGCTTCTCTCATGGGATTCTCGCTTTTCCTGTCACTGATGGTAGATAGGCTACATCATTACATAAGAGAACTTCGCATACTTAGAAAGACCGTGGAGGCTGCAAAGAAACAAAACCGAGCAGCTGAGGATGGCAAGAACAAGGGTGCAGATGAGGTCAAAATCCTACACGAAGAAACATCTAGGTTGCAGTCGGAGATCAAAAAGCTGGAAGCTGAGTATGAAACAAAGGTAAAAGAGGTGAAATCTGCAGAAGCCAATTCGGTTGCTCTTAAAAATCAATCAGAAGGCTTTCTTCTTGAATATGACCGCCTGCTAGCAGAAAACCAGAATCTTAGAGACCAACTGCGCTCCATTGATGAATGCTTGTCTCATTCCAACGGAAAGAAGGATACATGA 660 43.79 MIYLFFSLLFVEMVTILLLLFKTPLRKLLIIGIDRMKRGRAPLVVKSVGATVFVIMMYNVYSVTEIQSRPADSLNPTDQIILAYHMLEASLMGFSLFLSLMVDRLHHYIRELRILRKTVEAAKKQNRAAEDGKNKGADEVKILHEETSRLQSEIKKLEAEYETKVKEVKSAEANSVALKNQSEGFLLEYDRLLAENQNLRDQLRSIDECLSHSNGKKDT 219
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00814 219 Coils Coil 140 174 - -
Armi1g00814 219 PANTHER BCR-ASSOCIATED PROTEIN, BAP 1 200 IPR008417 GO:0005783(InterPro)|GO:0005789(PANTHER)|GO:0006886(InterPro)|GO:0006888(PANTHER)|GO:0016020(InterPro)|GO:0070973(PANTHER)
Armi1g00814 219 Gene3D - 136 199 - -
Armi1g00814 219 FunFam B-cell receptor-associated protein 29 136 199 - -
Armi1g00814 219 Coils Coil 189 209 - -
Armi1g00814 219 Coils Coil 105 132 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00814 K14009 B-cell receptor-associated protein 31
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Event-related genes

Select Gene_1 Gene_2 Event_name
20306 Armi1g00814 Armi7g00308
20307 Armi1g00814 Armi8g02203
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr1:21093244 Armi8g02723 Armi-Chr8:97199209 dispersed
Armi Armi-Chr1:21093244 Armi15g01584 Armi-Chr15:75601564 wgd
Armi Armi-Chr1:21093244 Armi7g00308 Armi-Chr7:5451377 wgd
Armi Armi-Chr1:21093244 Armi8g02203 Armi-Chr8:87079007 wgd