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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00829 ATGAACCGCCGGATCAGAAGACGATCTGCCATCACCCACGGCTACCTCCGCTACCTAAAGCCCGGCGCCCTTGCCAAGCTCCGGGACTCCAAAATCAACGCCATAACTCATCATCGATCTTCCGATTCTCAGATCTATCTCTTTCGCGCTATATCGTTGTCCAGCGGTACCGGTGCTTCTCCTTCCCGATCGCCTGCTGCTTCTCCTTTGCGATCTCCCAACGGTGCCGGACAACAACAACAGGAAGCTGCTGGTACTGTCGCTGCAACTGATGGCGGTTCCCCTTGCTTTTCCGTGAGGTTTTACGGTCCTAGGTGTCCGCAGAGGAAGAAGCTAATGGCTGCTAGATCTATGTTTTTTATGAATCCTAACCCTAACCCTAACCTTCCGGCATCGGATGGTCCTGAACCGGTTATTGATGCTTTCACTAATGATTTCCTTGTTGCTCATTGA 453 51.88 MNRRIRRRSAITHGYLRYLKPGALAKLRDSKINAITHHRSSDSQIYLFRAISLSSGTGASPSRSPAASPLRSPNGAGQQQQEAAGTVAATDGGSPCFSVRFYGPRCPQRKKLMAARSMFFMNPNPNPNLPASDGPEPVIDAFTNDFLVAH 150
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00829 150 PANTHER OS06G0679600 PROTEIN 1 150 - -
Armi1g00829 150 MobiDBLite consensus disorder prediction 55 87 - -
Armi1g00829 150 MobiDBLite consensus disorder prediction 55 92 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00829 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
20309 Armi1g00829 Armi7g00305
20310 Armi1g00829 Armi8g02184
20311 Armi1g00829 Armi8g02185
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr1:21783297 Armi8g02185 Armi-Chr8:86843551 dispersed
Armi Armi-Chr1:21783297 Armi7g00305 Armi-Chr7:5380730 wgd
Armi Armi-Chr1:21783297 Armi8g02184 Armi-Chr8:86799024 wgd