AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00830 ATGCCTGTAACGGGACCGCATTCTTCAGCTCTCCTCCGTCGAGCTTCCTCTAGGTCCTCCGCCACCAGGAAGCTTTACTCTTCACTTTCCGGTAATAAATCTCCATCACCTTCACCTTCATCTTCACCACTCGCATCTCGCTCGCGATCTCATGCAACCGCATCCGCCGGTTTTCGCTCTCTCCGATCTCCATGGAGTCACGGCGTCGATTGGAAGTCTCCTGCTTCTCTGTCTTCTCAGATCAGGACTACTGCTTCTCCTGTCCTTGATCGTTTTCACCGATCTCTCGCTACTATTGCCTCCAAGAATGTTTTCAATGGGATTTTGACTGGTCTTCCAAAGCCTGGAGGTGGGGAGTTTGGAAAGTTCTATAGTTTGCCTGCTCTGAACGATCCAAGAGTTGACAAGCTGCCATATTCAATTAGGATCCTCCTTGAATCAGCAATCCGTAATTGTGACAATTTTCAAGTCACTAAGGAAGATGTTGAGAAAATCATTGATTGGGAGAAGACTGCTCCAAAGCAAGTTGAGATTCCATTCAAGCCGGCTCGTGTTCTGTTGCAGGATTTTACTGGTGTACCAGCTGTGGTAGATCTTGCATGTATGCGTGATGCCATGAAAAATCTTGGCGGCGACTCCGACAAAATCAATCCTTTGGTTCCTGTGGATCTTGTCGTGGATCATTCGGTTCAAGTTGATGTTGCTAGGTCTGAAAATGCGGTAAACGCAAATATGGAACTTGAATTTCAGAGAAACAAGGAGAGATTTGCTTTTCTTAAGTGGGGATCCAAAGCTTTCCAGAATATGCTTGTGGTCCCACCAGGATCTGGTATTGTGCATCAGGTTAACCTTGAATATCTTGGACGAGTTGTCTTCAACACTGATGGAATGCTCTACCCTGATAGTGTTGTCGGAACTGATTCCCACACTACGATGATTGATGGGTTAGGTGTTGCTGGTTGGGGAGTTGGAGGAATTGAAGCAGAGGCCACAATGCTTGGGCAGCCAATGAGCATGGTTTTACCTGGTGTTGTTGGGTTCAAGTTATCTGGGAAACTGCGCAATGGTGTAACAGCTACTGATTTGGTTTTGACCGTCACCCAAATGTTAAGGAAGCATGGTGTCGTAGGCAAATTTGTTGAATTCCATGGGGATGGTGTGGGTAAAATATCACTTGCTGACAGGGCTACTATTGCCAACATGTCTCCCGAATATGGTGCAACAATGGGGTTCTTCCCAGTGGATCATGTTACTCTTCAGTATCTCAAATTAACTGGCCGAAGTGATGATACAGTTGCCATGATAGAAGCGTACTTACGTGCAAACAATATGTTTGTTGATTATAATGAGCCACAACAAGAAAGAGTCTACTCATCATACTTGGAGCTAGACCTTTCAGATGTAGAACCCTGTATTTCAGGGCCAAAGAGACCTCATGACCGAGTCACTTTGAAAGACATGAAAGCAGATTGGCATTCTTGTCTGGATAATAAAGTGGGATTCAAAGGTTTTGCCGTACCAAAGGAGGCACAAGACAAAGTTGCAAAATTTTCTTTTCATGGACAACCAGCAGAGCTTAGGCATGGCAGTGTTGTGATTGCTGCCATCACAAGTTGCACAAATACATCAAACCCTAGTGTTATGCTTGGGGCAGGTCTTGTTGCAAAAAAGGCCTGTGAATTGGGCCTAAAGGTCAAACCGTGGATTAAAACAAGTCTTGCTCCAGGCTCTGGAGTTGTTACAAAATATTTGCTCCAAAGTGGGTTGCAGAAGTATTTAAATGAACAAGGTTTCAACATTGTTGGTTATGGCTGCACAACATGTATCGGCAATTCAGGGGAATTGGATGAAGCTGTTGGTGCCGCTATAACTGAAAATGATATCATTGCATCAGCTGTTCTCTCTGGGAATCGAAACTTCGAGGGGCGTGTTCATGCCTTAACAAGAGCAAACTATCTTGCATCTCCCCCTTTGGTTGTTGCTTATGCCCTTGCTGGCACGGTTGATATTGATTTTGAGAAGGAACCAATTGGAGTTGGAAAAGATGGAAAGGATGTATATTTTAGGGATATCTGGCCAAGCACCGAAGAAATTGCGGATGTCGTTCAATCGAGTGTTCTTCCCGCTATGTTTAAGAGTACTTATGAATCCATCACCCAGGGAAATCCCATGTGGAATGACCTATCAGTCCCTGAATCTAAGCTATACTCATGGGATACAAGCTCTACCTACATTCATGAGCCACCATATTTCAAAAACATGACAATGGACCCTCCTGGGGCCCACGGCGTGAAGGATGCCTATTGCTTGCTGAACTTTGGTGACAGTATCACGACAGATCACATTTCGCCCGCAGGAAGCATTCACAAGGACAGCCCGGCTGCAAAGTTTCTTCTTGAACACGGTGTTGATCGCAAGGACTTCAATTCCTATGGCAGTCGTCGAGGTAATGATGAAATTATGGCAAGGGGTACTTTTGCCAATATCCGCCTCGTCAACAAGCTCTTAAACGGGGAGGTTGGCCCAAACACAGTACATGTTCCCACAGGAGAGAAACTCTCGGTGTTCGATGCAGCATCAAAATATAAAGCTGCTGGTCAGGATACAATTGTGTTGGCTGGAGCAGAGTATGGAAGTGGAAGCTCCAGAGATTGGGCTGCCAAGGGTCCTATGTTATTGGGAGTTAAAGCGGTAATTGCAAAAAGCTTTGAGAGGATTCATCGCAGTAATTTGGTAGGAATGGGTATTATACCACTTTGCTTCAAAGCTGGTGAGGATGCCGACACACTACAGTTGACCGGTCATGAACGATATACCATTGACCTACCGAGCAACATTAGTGAGATCCGGCCTGGTCAAGATGTCAATGTCAGCACCAACACCGGAAAGTCGTTCACGTGTACTGTCCGCTTTGACACTGAGGTGGAATTGGCTTATTTCAATCATGGTGGCATCCTTCCATATGTTATCAGACAACTATCAACACAGAAATGA 2994 45.29 MPVTGPHSSALLRRASSRSSATRKLYSSLSGNKSPSPSPSSSPLASRSRSHATASAGFRSLRSPWSHGVDWKSPASLSSQIRTTASPVLDRFHRSLATIASKNVFNGILTGLPKPGGGEFGKFYSLPALNDPRVDKLPYSIRILLESAIRNCDNFQVTKEDVEKIIDWEKTAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMKNLGGDSDKINPLVPVDLVVDHSVQVDVARSENAVNANMELEFQRNKERFAFLKWGSKAFQNMLVVPPGSGIVHQVNLEYLGRVVFNTDGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEATMLGQPMSMVLPGVVGFKLSGKLRNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGVGKISLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVAMIEAYLRANNMFVDYNEPQQERVYSSYLELDLSDVEPCISGPKRPHDRVTLKDMKADWHSCLDNKVGFKGFAVPKEAQDKVAKFSFHGQPAELRHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLKVKPWIKTSLAPGSGVVTKYLLQSGLQKYLNEQGFNIVGYGCTTCIGNSGELDEAVGAAITENDIIASAVLSGNRNFEGRVHALTRANYLASPPLVVAYALAGTVDIDFEKEPIGVGKDGKDVYFRDIWPSTEEIADVVQSSVLPAMFKSTYESITQGNPMWNDLSVPESKLYSWDTSSTYIHEPPYFKNMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKFLLEHGVDRKDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPNTVHVPTGEKLSVFDAASKYKAAGQDTIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADTLQLTGHERYTIDLPSNISEIRPGQDVNVSTNTGKSFTCTVRFDTEVELAYFNHGGILPYVIRQLSTQK 997
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00830 997 FunFam Aconitate hydratase 103 470 - -
Armi1g00830 997 Gene3D Aconitase, domain 4 759 994 IPR015928 -
Armi1g00830 997 Gene3D Aconitase, domain 3 471 694 IPR015931 -
Armi1g00830 997 Gene3D Aconitase, domain 3 105 470 IPR015931 -
Armi1g00830 997 Gene3D - 695 756 - -
Armi1g00830 997 FunFam cytoplasmic aconitate hydratase 471 694 - -
Armi1g00830 997 SUPERFAMILY Aconitase iron-sulfur domain 117 731 IPR036008 -
Armi1g00830 997 SUPERFAMILY LeuD-IlvD-like 735 992 - -
Armi1g00830 997 ProSitePatterns Aconitase family signature 2. 597 610 IPR018136 -
Armi1g00830 997 FunFam Aconitate hydratase 758 995 - -
Armi1g00830 997 CDD AcnA-IRP 184 668 - -
Armi1g00830 997 CDD AcnA-IRP-Swivel 772 942 IPR044137 -
Armi1g00830 997 Pfam Aconitase family (aconitate hydratase) 163 666 IPR001030 -
Armi1g00830 997 NCBIfam aconitate hydratase AcnA 121 993 IPR006249 -
Armi1g00830 997 PANTHER ACONITASE-IRON-RESPONSIVE ELEMENT FAMILY MEMBER 102 994 IPR006249 GO:0003994(PANTHER)|GO:0005739(PANTHER)|GO:0005829(PANTHER)|GO:0006099(PANTHER)|GO:0006101(PANTHER)|GO:0030350(PANTHER)|GO:0051539(PANTHER)
Armi1g00830 997 ProSitePatterns Aconitase family signature 1. 531 547 IPR018136 -
Armi1g00830 997 MobiDBLite consensus disorder prediction 1 49 - -
Armi1g00830 997 MobiDBLite consensus disorder prediction 10 49 - -
Armi1g00830 997 PRINTS Aconitase family signature 535 546 IPR001030 -
Armi1g00830 997 PRINTS Aconitase family signature 269 277 IPR001030 -
Armi1g00830 997 PRINTS Aconitase family signature 597 610 IPR001030 -
Armi1g00830 997 PRINTS Aconitase family signature 298 311 IPR001030 -
Armi1g00830 997 PRINTS Aconitase family signature 388 401 IPR001030 -
Armi1g00830 997 PRINTS Aconitase family signature 470 484 IPR001030 -
Armi1g00830 997 PRINTS Aconitase family signature 245 258 IPR001030 -
Armi1g00830 997 PRINTS Aconitase family signature 374 387 IPR001030 -
Armi1g00830 997 PRINTS Aconitase family signature 312 327 IPR001030 -
Armi1g00830 997 Pfam Aconitase C-terminal domain 795 923 IPR000573 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00830 K01681 aconitate hydratase [EC:4.2.1.3]
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Event-related genes

Select Gene_1 Gene_2 Event_name
20312 Armi1g00830 Armi8g02180
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr1:21799312 Armi8g02716 Armi-Chr8:97083569 dispersed
Armi Armi-Chr1:21799312 Armi8g02180 Armi-Chr8:86740617 wgd