AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00839 ATGAGTCAAATTACCAGAAAAATGTGGGGTTTGAACCTCAAGAAAACAATCAGCTGGCGTGTAGCTTTTCTCCGGCGATGTGCTCGATCTTTATGGCACCAAATTCTTGCTTGTTGGATCGGAAAATCAATCCAGTACCGTCAGTTGTTAAATTCCGGTTCCGGCCCTTTGATTCCGACTTCTCGTCGTCGGCCGGAGAGGACAACGACGGCGATGGATGTTGCCACCATGTACCACCAGGTGGAAATGACAGCTTCTAGCGGCGATGGGTTCGATTCCGGCGAAATGACGTCATCCTGCGGTGGCTCTGAGGGTTCCGATTTGGTGGCTTTGAAGATTAGTGTGTTGGGTGATCAACATATCGGCAAAACTAGCTTCTTGGCAAAATACGTTGGGAAAGAGAAGAATGAAGAAGAATTAGAAGGCACAGGAATAATAAATCAGATGGATAAAACACTTTGTGTTAAAGGAGCCAGGATTGCCTACAGTATATGGGAAGTGGGTGGTGATGCATTTTATCCAGATGGTGAATTGAGGACCTCGATTCCTGCCGCCTGTAAAGACTCAGTTGCTATATTATTCATGTTCGATTTAACGAGTCGATGTACGCTTAACAGTGTCATCAATTGGCACCAGCAAGCTAGGTATCATAATCAGATGGCGATACCGGTGATGGTCGGGAGCAAGTTTGACGAATTTGTCCAGCTTCCGTTAGATTTACAATGGACGATTGCAAACCAGGCAAGAACATACGCAAAGGCCATAAACGCAACCTTGTTCTTCTCGAGTGCATCTTACAACATAAATGTAAATAAAATCTTCAAGTTCGTAACTGCAAAGCTCTTTGACTTGCCGTGGGCTTTGGAGCGTAATCTTACAATTGGGGAGCCTATCATCGATTTTTGA 906 44.92 MSQITRKMWGLNLKKTISWRVAFLRRCARSLWHQILACWIGKSIQYRQLLNSGSGPLIPTSRRRPERTTTAMDVATMYHQVEMTASSGDGFDSGEMTSSCGGSEGSDLVALKISVLGDQHIGKTSFLAKYVGKEKNEEELEGTGIINQMDKTLCVKGARIAYSIWEVGGDAFYPDGELRTSIPAACKDSVAILFMFDLTSRCTLNSVINWHQQARYHNQMAIPVMVGSKFDEFVQLPLDLQWTIANQARTYAKAINATLFFSSASYNINVNKIFKFVTAKLFDLPWALERNLTIGEPIIDF 301
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00839 301 Gene3D - 106 287 IPR027417 -
Armi1g00839 301 FunFam Septum-promoting GTP-binding protein 1 102 291 - -
Armi1g00839 301 PANTHER - 109 300 - GO:0003924(PANTHER)|GO:0005525(PANTHER)
Armi1g00839 301 PRINTS Transforming protein P21 ras signature 153 175 - -
Armi1g00839 301 PRINTS Transforming protein P21 ras signature 259 281 - -
Armi1g00839 301 PRINTS Transforming protein P21 ras signature 111 132 - -
Armi1g00839 301 PRINTS Transforming protein P21 ras signature 219 232 - -
Armi1g00839 301 ProSiteProfiles small GTPase Rab1 family profile. 106 301 - -
Armi1g00839 301 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 111 293 IPR027417 -
Armi1g00839 301 Pfam Ras family 112 280 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Armi1g00839 301 SMART rab-sub-5 111 284 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00839 K07976 Rab family, other
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Event-related genes

Select Gene_1 Gene_2 Event_name
20313 Armi1g00839 Armi8g02178
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr14:76038811 Armi1g00839 Armi-Chr1:22008953 dispersed
Armi Armi-Chr1:22008953 Armi5g00463 Armi-Chr5:9510629 dispersed
Armi Armi-Chr1:22008953 Armi8g02178 Armi-Chr8:86722393 wgd