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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00842 ATGAAGATCCAGTGCGACGTCTGTCAAAAAGCCGAGGCCGCTGTTTACTGCACTGCCGACGAAGCCTCCCTATGCTCCGCCTGTGACCACCGTGTTCACCATGCCAATAAGCTCGCCAACAGACATCCTCGTTTTTCTCTCCTCCATCCTTCTTTCACAGACTCCCCTCGCTGCGATATCTGTCAGGAGCGGAGAGCGTTTCTGTTCTGCAAAGAAGATCGAGCAATTTTATGCAGAGAATGCGACATTCCGATTCACAAAGCGAACGAACACACACAGAAACACACTCGATTTCTTCTCACTGGCGTTAAACTCTCGGCATCGTTATCGTGTTATGATAATGATTCATCGCATCAAACTCCATCTTCGACGTCGAATTCCAACTGTTCTATTGAAATTGAGAGCACAAAAGGCTCTGGTGTTTCGATAGATCAACGAAGTGGCTCGATAGATTATCGTTCAAATTGCAGTGTGAACCAAGAAGAAGGTGCTTCAATGGAGGCCAGGAGTATTTCAGAGTATTTGATGGAAACGTTGCCTGGATGGCATGTTGATGAATTCCTCGATCCTTATGGCTTCTGTAAGTTTTCTAGAATTTATTCGAATTTGGTATCTTTAGTTTTAAAAGTTACACTTTTTATGCCTGTAGTTTAG 654 44.34 MKIQCDVCQKAEAAVYCTADEASLCSACDHRVHHANKLANRHPRFSLLHPSFTDSPRCDICQERRAFLFCKEDRAILCRECDIPIHKANEHTQKHTRFLLTGVKLSASLSCYDNDSSHQTPSSTSNSNCSIEIESTKGSGVSIDQRSGSIDYRSNCSVNQEEGASMEARSISEYLMETLPGWHVDEFLDPYGFCKFSRIYSNLVSLVLKVTLFMPVV 217
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00842 217 Pfam B-box zinc finger 3 44 IPR000315 GO:0008270(InterPro)
Armi1g00842 217 Pfam B-box zinc finger 54 94 IPR000315 GO:0008270(InterPro)
Armi1g00842 217 CDD Bbox1-BBX-like 58 100 IPR049808 -
Armi1g00842 217 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Armi1g00842 217 CDD Bbox1-BBX-like 5 47 IPR049808 -
Armi1g00842 217 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270(InterPro)
Armi1g00842 217 FunFam B-box zinc finger protein 21 1 98 - -
Armi1g00842 217 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 189 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Armi1g00842 217 SMART bboxneu5 53 100 IPR000315 GO:0008270(InterPro)
Armi1g00842 217 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Armi1g00842 217 Gene3D Classic Zinc Finger 1 99 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00842 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
20314 Armi1g00842 Armi7g00280
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr1:22115988 Armi7g00280 Armi-Chr7:4946619 dispersed
Armi Armi-Chr11:4751320 Armi1g00842 Armi-Chr1:22115988 transposed
Armi Armi-Chr1:22115988 Armi14g01033 Armi-Chr14:62161709 wgd
Armi Armi-Chr1:22115988 Armi2g01245 Armi-Chr2:38578260 wgd
Armi Armi-Chr1:22115988 Armi7g00298 Armi-Chr7:5274193 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Armi1g00115 . 179 319 C2C2-CO-like Transcription Factor family AT3G02380 29.787 6.28e-11 60.1
Armi1g00459 ACH 1 299 C2C2-CO-like Transcription Factor family AT1G78600 48.254 9.17e-83 249.0
Armi1g00616 ACH 1 372 C2C2-CO-like Transcription Factor family AT3G07650 54.699 4.43e-135 389.0
Armi1g00842 ACH 1 206 C2C2-CO-like Transcription Factor family AT1G75540 55.45 5.73e-66 204.0
Armi1g03623 . 8 330 C2C2-CO-like Transcription Factor family AT5G57660 46.199 2.45e-79 246.0
Armi1g03624 . 8 355 C2C2-CO-like Transcription Factor family AT5G57660 44.715 1.43e-85 261.0
Armi2g01245 ACH 1 331 C2C2-CO-like Transcription Factor family AT1G75540 47.801 4.14e-81 247.0
Armi3g02475 ACH 284 331 C2C2-CO-like Transcription Factor family AT5G57660 54.167 2.52e-10 58.5
Armi3g04111 . 10 132 C2C2-CO-like Transcription Factor family AT1G68190 49.593 1.79e-39 135.0
Armi4g01270 ACH 334 386 C2C2-CO-like Transcription Factor family AT5G24930 50.943 8.05e-11 61.6
Armi4g02884 ACH 11 347 C2C2-CO-like Transcription Factor family AT3G02380 52.116 6.54e-121 352.0
Armi4g04613 ACH 312 388 C2C2-CO-like Transcription Factor family AT5G24930 42.857 4.75e-10 57.8
Armi5g01485 ACH 3 114 C2C2-CO-like Transcription Factor family AT4G27310 52.586 1.28e-31 114.0
Armi6g00033 . 306 388 C2C2-CO-like Transcription Factor family AT5G24930 44.048 1.46e-11 63.9
Armi6g01400 . 190 270 C2C2-CO-like Transcription Factor family AT2G24790 44.444 1.22e-11 62.8
Armi7g00280 ACH 1 299 C2C2-CO-like Transcription Factor family AT1G78600 52.698 2.09e-92 274.0
Armi7g00298 . 1 224 C2C2-CO-like Transcription Factor family AT1G75540 48.908 3.27e-63 200.0
Armi7g00379 ACH 1 372 C2C2-CO-like Transcription Factor family AT3G07650 49.635 8.94e-124 360.0
Armi8g02366 ACH 1 373 C2C2-CO-like Transcription Factor family AT5G48250 53.349 9.34e-135 389.0
Armi8g02458 ACH 1 299 C2C2-CO-like Transcription Factor family AT1G78600 53.035 1.29e-95 283.0
Armi8g02655 . 3 163 C2C2-CO-like Transcription Factor family AT4G27310 41.176 5.77e-33 116.0
Armi9g00993 ACH 315 388 C2C2-CO-like Transcription Factor family AT5G24930 41.892 1.39e-11 63.9
Armi10g00982 . 45 406 C2C2-CO-like Transcription Factor family AT5G24930 51.697 2.68e-101 304.0
Armi11g00250 . 1 183 C2C2-CO-like Transcription Factor family AT4G38960 61.321 2.26e-84 246.0
Armi11g00315 ACH 3 218 C2C2-CO-like Transcription Factor family AT4G27310 36.752 4.19e-33 118.0
Armi11g01173 . 1 121 C2C2-CO-like Transcription Factor family AT3G21890 43.077 2.18e-26 93.6
Armi12g00004 . 5 222 C2C2-CO-like Transcription Factor family AT3G21150 27.2 3.13e-17 75.5
Armi13g00380 ACH 56 347 C2C2-CO-like Transcription Factor family AT3G02380 48.315 5.91e-92 278.0
Armi13g01544 . 226 319 C2C2-CO-like Transcription Factor family AT3G02380 51.064 6.04e-26 99.4
Armi14g01033 ACH 1 331 C2C2-CO-like Transcription Factor family AT1G75540 43.109 4.54e-77 236.0
Armi14g01080 . 61 348 C2C2-CO-like Transcription Factor family AT5G15840 27.679 3.31e-17 79.7
Armi16g01131 ACH 185 270 C2C2-CO-like Transcription Factor family AT2G24790 40.698 1.20e-11 61.6
Armi16g01740 . 6 328 C2C2-CO-like Transcription Factor family AT2G47890 45.17 2.80e-96 289.0
Armi17g01047 ACH 282 338 C2C2-CO-like Transcription Factor family AT5G15850 45.614 1.13e-12 63.2
Armi18g00016 . 8 401 C2C2-CO-like Transcription Factor family AT2G33500 38.799 2.17e-75 238.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Armi zf-B_box 1.8e-07 CL0782 TF DBB