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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00846 ATGGCGGACCACGGTGGCGGAGGAGGATGTTGTCCGCCGATGGATCTGTTCCGTTCAGAACCGATGCACTTAGTACAAATCATCATTCCGATCGAGTCTGCTCATTCAACTGCCTCTTACCTTGGAGATATCGGTCTCATTCAATTTAAAGATCTGAATGCGGAAAAAAGCCCTTTCCAGCGAACATATGCAGGCCAGATTAAAAAATGCGGAGAAATGGCACGGAAGTTGCGTTTCTTCAAAGATCAAATGTCAAAGGCGGGTTTCACACCCTCAGCAAAAACTGACGCGCAAGGTGATATTAATCTGGATGGTCTGGAGGTAAATCTTGGAAATCTTGAAGCCGAGCTGATTGAAATAAATGCAAATGGTGAAAAGTTGCAGCGCGGTTATAATGAGCTCTTAGAATATAAGCTTGTTCTGCAAAAGGCTGGAGAGTTTTTCAGAGTGGCACATAGCAGTGCTGTAGCTCAGCAGAGTGAAAGTGCATCAGACCAGGCTCCTGAAGAATCTTTGGAAACTCCTCTTCTGATGGATCAAGAGTCAAAAACTGAGCAAGGCAAGCAAGTTAAATTGGGGTTTCTCGCTGGCCTTGTGCCTAAAGAAAAAACTATGGCTTTTGAAAGAATTCTATTCCGTGCTACTAGGGGTAACGTCTTTTTGAGGCAGGCTGCCGTGGAAGAAGCTGTTACTGATCCTAGCTCAGGAGAGAAGGTTTTGAAAAATGTATTTCTGGTTTTCTTTTCTGGAGAAAGAGCAAAAAGCAAAGTTCTCAAAATATGCGAAGCCTTCGGAGCAAATCGTTACCCTTTCGCTGAGGATCTTAGCAAACAAGAACTATTAATAACTGAGGTATCTGGAAGGATATCTGAGCTCAAGATGACGATAGATCTTGGGCTTGTGCACCGTGGCAATTTGTTACAAAGGATAGGAGAACAATATGAACGGTGGAACCTTCTGGTGCAAAGAGAGAAATCTATCTATCACACTCTAAATATGCTCAGCATCGATGTGACAAGAAAATGTCTTGTGGCTGAAGGGTGGAGTCCCATATATGCAACTGAACAGATTCAAGATGCACTGGAGCGGGCAACAATAGATTCCAATTCACAAGTTGGTGCTATATTTCAAGTTTTGCACACAAAAGAGTTACCTCCAACCTTTTTCCAGACAAACAAATTTACTGATTCCTTCCAAACAATCGTTGATGCATATGGGGTTGCCAAGTACCAAGAAGCAAATCCTGGAGTATATACTATCGTCACATTCCCATTTCTGTTTGCTGTAATGTTCGGTGACTGGGGGCACGGTATATGCCTGCTGCTGGCAACATTATTTTTGATATTCAAGGAGAAGAAATACTCCACTCAGAAGCTTGGAGACATTATGGAAATGACCTTTGGGGGTCGTTATGTGATATTGTTGATGTCACTTTTCTCAATCTACACGGGTTTGATCTATAATGAGTTCTTCTCCGTTCCATTTGAGTTATTTAGTCCTTCCGCTTATGTATGCCGTGATGCTTCTTGCAGTGAAGCCACCACTATTGGCTTGATAAAGGGAAGGGATACATACCCGTTCGGTGTGGATCCTGCATGGCATGGGAGTCGCAGTGAGTTGCCATTCCTCAACTCATTGAAGATGAAAATGTCAATTCTTATTGGGGTAGCACAAATGAACCTTGGAATAATAATGAGCTTTTTCAACGCGGTGTACTTTCGGAATGCCGTAAATATTTGGTTCCAGTTTATCCCTCAGATGATCTTTCTGAACGGATTATTTGGATACCTTTCCCTCCTCATCATTGTGAAGTGGTGCACTGGTTCAAAAGCTGATTTATACCATGTAATGATATACATGTTCCTTAGTCCTACTGATGAACTTGGTGAAAACCAACTTTTTGCAAACCAGAAGACACTTCAGCTTGTGCTGCTAGGACTATCCCTGATTGCCGTCCCATGGATGCTGCTACCTAAGCCTTTCATTTTAAAGGCACAACACAAGAGGACACATGAAGGCCAGTCCTACACACCCCTTGAAGGTGAAGATGACTCTTTGCAAGTGGAGGCAAATCACGATTCCCATGATCATGAGGAATTTGAGTTCAGTGAAATATTTGTTCATCAACTCATCCATACAATAGAATTTGTACTTGGGGCAGTATCAAATACAGCTTCGTACCTTCGTTTATGGGCTCTCAGCTTGGCACATTCAGAGCTGTCAACCGTGTTCTATGAGAAGGTTCTTCTTCTTGCATGGGGGTACAATAACGTGATTATCCTTATTGTGGGCATCATCGTGTTTGTTTTTGCAACGGTGGGTGTGTTGCTAGTGATGGAAACGCTGAGTGCCTTCCTGCACGCATTAAGACTTCACTGGGTGGAGTTCCAAAACAAGTTCTACGACGGAGACGGATACAAGTTCCATCCATTCTCCTTTGCTTTACTGGGTGACGATGATGAATGA 2466 43.07 MADHGGGGGCCPPMDLFRSEPMHLVQIIIPIESAHSTASYLGDIGLIQFKDLNAEKSPFQRTYAGQIKKCGEMARKLRFFKDQMSKAGFTPSAKTDAQGDINLDGLEVNLGNLEAELIEINANGEKLQRGYNELLEYKLVLQKAGEFFRVAHSSAVAQQSESASDQAPEESLETPLLMDQESKTEQGKQVKLGFLAGLVPKEKTMAFERILFRATRGNVFLRQAAVEEAVTDPSSGEKVLKNVFLVFFSGERAKSKVLKICEAFGANRYPFAEDLSKQELLITEVSGRISELKMTIDLGLVHRGNLLQRIGEQYERWNLLVQREKSIYHTLNMLSIDVTRKCLVAEGWSPIYATEQIQDALERATIDSNSQVGAIFQVLHTKELPPTFFQTNKFTDSFQTIVDAYGVAKYQEANPGVYTIVTFPFLFAVMFGDWGHGICLLLATLFLIFKEKKYSTQKLGDIMEMTFGGRYVILLMSLFSIYTGLIYNEFFSVPFELFSPSAYVCRDASCSEATTIGLIKGRDTYPFGVDPAWHGSRSELPFLNSLKMKMSILIGVAQMNLGIIMSFFNAVYFRNAVNIWFQFIPQMIFLNGLFGYLSLLIIVKWCTGSKADLYHVMIYMFLSPTDELGENQLFANQKTLQLVLLGLSLIAVPWMLLPKPFILKAQHKRTHEGQSYTPLEGEDDSLQVEANHDSHDHEEFEFSEIFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYNNVIILIVGIIVFVFATVGVLLVMETLSAFLHALRLHWVEFQNKFYDGDGYKFHPFSFALLGDDDE 821
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00846 821 Coils Coil 103 123 - -
Armi1g00846 821 PANTHER VACUOLAR PROTON ATPASES 14 816 IPR002490 GO:0007035(PANTHER)|GO:0016471(PANTHER)|GO:0033179(InterPro)|GO:0046961(InterPro)|GO:0051117(PANTHER)|GO:1902600(InterPro)
Armi1g00846 821 Pfam V-type ATPase 116kDa subunit family 40 813 IPR002490 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Armi1g00846 821 PIRSF ATP6V0A1 12 821 IPR026028 GO:0000220(InterPro)|GO:0046961(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00846 K02154 V-type H+-transporting ATPase subunit a
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Event-related genes

Select Gene_1 Gene_2 Event_name
20315 Armi1g00846 Armi7g00231
20316 Armi1g00846 Armi7g00429
20317 Armi1g00846 Armi8g02173
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr1:22374109 Armi12g00812 Armi-Chr12:20284565 wgd
Armi Armi-Chr1:22374109 Armi2g01254 Armi-Chr2:39043963 wgd
Armi Armi-Chr1:22374109 Armi6g00952 Armi-Chr6:18382022 wgd
Armi Armi-Chr1:22374109 Armi7g00429 Armi-Chr7:8092423 wgd
Armi Armi-Chr1:22374109 Armi8g02173 Armi-Chr8:86585712 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Armi1g00299 . 495 547 Primary Pumps ATPases gene family AT5G62670 84.906 1.64e-25 96.7
Armi1g00846 ACH 15 821 Primary Pumps ATPases gene family AT2G21410 76.609 0.0 1301.0
Armi1g01460 . 139 226 Primary Pumps ATPases gene family AT4G33520 75.0 7.65e-42 139.0
Armi1g01845 . 5 770 Primary Pumps ATPases gene family AT1G15690 80.234 0.0 1262.0
Armi1g03300 ACH 6 770 Primary Pumps ATPases gene family AT1G15690 85.882 0.0 1345.0
Armi1g03302 ACH 706 770 Primary Pumps ATPases gene family AT1G15690 83.077 6.00e-32 114.0
Armi1g03725 . 3 948 Primary Pumps ATPases gene family AT4G30190 87.751 0.0 1668.0
Armi1g03754 . 8 1053 Primary Pumps ATPases gene family AT5G57110 72.753 0.0 1542.0
Armi1g04124 . 1 1061 Primary Pumps ATPases gene family AT1G07810 80.263 0.0 1739.0
Armi1g04405 . 1 1021 Primary Pumps ATPases gene family AT3G57330 69.7 0.0 1486.0
Armi2g00020 . 36 1085 Primary Pumps ATPases gene family AT3G21180 72.978 0.0 1577.0
Armi2g00112 . 1 1216 Primary Pumps ATPases gene family AT1G17500 74.611 0.0 1917.0
Armi2g00300 . 1 178 Primary Pumps ATPases gene family AT4G32530 90.503 3.60e-108 305.0
Armi2g00358 ACH 2 768 Primary Pumps ATPases gene family AT1G15690 90.091 0.0 1400.0
Armi2g00391 . 8 954 Primary Pumps ATPases gene family AT1G80660 83.949 0.0 1641.0
Armi2g00500 ACH 1 374 Primary Pumps ATPases gene family AT1G12840 79.412 0.0 639.0
Armi2g01115 . 295 382 Primary Pumps ATPases gene family AT4G38510 33.333 1.21e-07 48.1
Armi2g01229 ACH 1 165 Primary Pumps ATPases gene family AT1G19910 98.788 1.20e-112 315.0
Armi2g01254 ACH 14 284 Primary Pumps ATPases gene family AT4G39080 66.544 2.27e-122 367.0
Armi2g01832 . 1 1020 Primary Pumps ATPases gene family AT1G27770 78.235 0.0 1613.0
Armi2g02046 . 1 487 Primary Pumps ATPases gene family AT4G38510 96.319 0.0 964.0
Armi2g02064 . 1 998 Primary Pumps ATPases gene family AT1G10130 83.616 0.0 1728.0
Armi2g02638 ACH 1 109 Primary Pumps ATPases gene family AT3G01390 76.147 1.56e-45 141.0
Armi3g00196 ACH 20 1209 Primary Pumps ATPases gene family AT1G59820 72.111 0.0 1858.0
Armi3g00400 ACH 58 442 Primary Pumps ATPases gene family AT1G20260 28.928 1.34e-29 120.0
Armi3g00537 ACH 13 1193 Primary Pumps ATPases gene family AT1G68710 73.836 0.0 1851.0
Armi3g00901 ACH 1 236 Primary Pumps ATPases gene family AT5G13450 54.251 1.40e-91 268.0
Armi3g01175 . 1 203 Primary Pumps ATPases gene family AT5G47030 68.72 4.14e-106 302.0
Armi3g02194 . 210 528 Primary Pumps ATPases gene family AT1G78900 28.746 6.25e-28 115.0
Armi3g03287 ACH 5 104 Primary Pumps ATPases gene family AT4G23710 73.0 1.91e-44 138.0
Armi3g03981 ACH 13 1193 Primary Pumps ATPases gene family AT1G68710 73.626 0.0 1865.0
Armi3g04125 ACH 58 442 Primary Pumps ATPases gene family AT1G20260 29.177 1.53e-29 120.0
Armi3g04465 ACH 13 1212 Primary Pumps ATPases gene family AT1G59820 74.252 0.0 1921.0
Armi4g00275 . 56 382 Primary Pumps ATPases gene family AT4G38510 27.052 3.64e-25 107.0
Armi4g02107 . 5 1150 Primary Pumps ATPases gene family AT5G04930 69.165 0.0 1668.0
Armi4g02722 . 1 1014 Primary Pumps ATPases gene family AT4G37640 81.872 0.0 1699.0
Armi4g03005 ACH 1 351 Primary Pumps ATPases gene family AT3G28715 92.614 0.0 689.0
Armi4g03524 . 1 109 Primary Pumps ATPases gene family AT3G01390 61.468 3.28e-37 120.0
Armi4g03835 ACH 5 105 Primary Pumps ATPases gene family AT4G23710 64.356 7.01e-39 124.0
Armi5g00289 ACH 1 236 Primary Pumps ATPases gene family AT1G64200 73.729 5.45e-123 347.0
Armi5g00449 . 1 1207 Primary Pumps ATPases gene family AT1G17500 62.911 0.0 1585.0
Armi5g00653 . 3 1199 Primary Pumps ATPases gene family AT1G17500 57.364 0.0 1452.0
Armi5g01889 . 1 261 Primary Pumps ATPases gene family AT3G58730 73.282 1.48e-138 388.0
Armi5g02213 ACH 320 525 Primary Pumps ATPases gene family AT1G78900 29.327 5.57e-16 75.5
Armi6g00325 . 46 979 Primary Pumps ATPases gene family AT1G63440 55.745 0.0 1058.0
Armi6g00923 . 1 441 Primary Pumps ATPases gene family AT3G42050 78.271 0.0 734.0
Armi6g00952 . 3 817 Primary Pumps ATPases gene family AT2G28520 79.755 0.0 1334.0
Armi6g01444 . 1 990 Primary Pumps ATPases gene family AT1G63440 75.859 0.0 1519.0
Armi6g01600 . 1 236 Primary Pumps ATPases gene family AT1G64200 76.695 1.60e-124 351.0
Armi6g02210 . 3 956 Primary Pumps ATPases gene family AT5G62670 77.456 0.0 1497.0
Armi7g00037 . 1 623 Primary Pumps ATPases gene family AT1G78900 93.74 0.0 1212.0
Armi7g00429 ACH 14 821 Primary Pumps ATPases gene family AT4G39080 74.907 0.0 1266.0
Armi7g01508 . 8 1053 Primary Pumps ATPases gene family AT5G57110 72.212 0.0 1549.0
Armi7g01544 ACH 2 146 Primary Pumps ATPases gene family AT4G30110 66.207 1.25e-63 208.0
Armi7g01640 . 3 948 Primary Pumps ATPases gene family AT4G30190 87.012 0.0 1653.0
Armi7g01885 . 6 852 Primary Pumps ATPases gene family AT3G42640 78.867 0.0 1365.0
Armi7g01888 . 432 507 Primary Pumps ATPases gene family AT3G42640 71.053 1.07e-33 124.0
Armi7g01969 ACH 6 770 Primary Pumps ATPases gene family AT1G15690 88.758 0.0 1375.0
Armi8g00287 ACH 1 770 Primary Pumps ATPases gene family AT1G15690 87.143 0.0 1362.0
Armi8g00364 . 6 849 Primary Pumps ATPases gene family AT3G42640 82.346 0.0 1416.0
Armi8g00707 ACH 2 862 Primary Pumps ATPases gene family AT4G30110 58.002 0.0 1008.0
Armi8g00821 . 354 983 Primary Pumps ATPases gene family AT1G63440 35.758 2.33e-115 374.0
Armi8g01643 . 351 984 Primary Pumps ATPases gene family AT1G63440 38.626 3.38e-121 391.0
Armi8g02173 ACH 15 821 Primary Pumps ATPases gene family AT2G21410 78.465 0.0 1327.0
Armi9g00744 . 47 979 Primary Pumps ATPases gene family AT1G63440 57.754 0.0 1074.0
Armi9g01113 . 279 495 Primary Pumps ATPases gene family AT1G78900 25.11 3.76e-11 60.5
Armi9g01521 ACH 1 236 Primary Pumps ATPases gene family AT5G13450 52.033 2.08e-88 260.0
Armi9g01644 . 56 1021 Primary Pumps ATPases gene family AT3G57330 68.923 0.0 1392.0
Armi10g00092 . 1 126 Primary Pumps ATPases gene family AT4G02620 84.921 3.84e-80 230.0
Armi10g00254 ACH 1 235 Primary Pumps ATPases gene family AT1G64200 75.745 6.30e-124 349.0
Armi10g01325 . 33 1139 Primary Pumps ATPases gene family AT5G44240 83.032 0.0 1936.0
Armi10g01904 . 8 956 Primary Pumps ATPases gene family AT5G62670 79.666 0.0 1544.0
Armi11g00022 . 1 261 Primary Pumps ATPases gene family AT3G58730 78.927 1.00e-154 429.0
Armi11g00073 . 36 383 Primary Pumps ATPases gene family AT1G15700 29.752 3.26e-27 108.0
Armi11g00242 . 1 166 Primary Pumps ATPases gene family AT1G75630 98.795 8.60e-113 315.0
Armi11g00243 . 1 166 Primary Pumps ATPases gene family AT1G75630 98.795 8.60e-113 315.0
Armi12g00068 . 1 1203 Primary Pumps ATPases gene family AT1G17500 75.331 0.0 1916.0
Armi12g00203 ACH 1 768 Primary Pumps ATPases gene family AT1G15690 88.411 0.0 1373.0
Armi12g00222 . 1 954 Primary Pumps ATPases gene family AT1G80660 83.648 0.0 1637.0
Armi12g00812 ACH 14 821 Primary Pumps ATPases gene family AT4G39080 74.907 0.0 1276.0
Armi12g00822 ACH 1 165 Primary Pumps ATPases gene family AT1G19910 98.788 1.20e-112 315.0
Armi12g01046 . 6 960 Primary Pumps ATPases gene family AT3G47950 91.309 0.0 1771.0
Armi12g01298 . 46 383 Primary Pumps ATPases gene family AT1G15700 69.231 1.10e-171 481.0
Armi12g01331 ACH 17 230 Primary Pumps ATPases gene family AT4G09650 59.633 2.47e-86 254.0
Armi13g00220 . 1 1178 Primary Pumps ATPases gene family AT5G23630 75.169 0.0 1814.0
Armi13g00528 . 1 225 Primary Pumps ATPases gene family AT4G11150 67.111 3.95e-105 301.0
Armi13g00570 . 100 804 Primary Pumps ATPases gene family AT4G37270 69.972 0.0 989.0
Armi13g00623 . 1 1014 Primary Pumps ATPases gene family AT4G37640 80.197 0.0 1660.0
Armi13g00810 . 58 437 Primary Pumps ATPases gene family AT1G20260 28.283 2.84e-27 113.0
Armi13g01495 . 14 1158 Primary Pumps ATPases gene family AT5G04930 70.837 0.0 1706.0
Armi13g01624 . 1 1001 Primary Pumps ATPases gene family AT5G44790 68.854 0.0 1412.0
Armi14g00046 ACH 3 233 Primary Pumps ATPases gene family AT4G09650 56.148 4.11e-91 267.0
Armi14g00501 . 1 487 Primary Pumps ATPases gene family AT4G38510 96.524 0.0 963.0
Armi14g01036 ACH 1 165 Primary Pumps ATPases gene family AT1G19910 98.788 1.20e-112 315.0
Armi14g01215 . 6 960 Primary Pumps ATPases gene family AT3G47950 92.147 0.0 1781.0
Armi14g01399 ACH 1 374 Primary Pumps ATPases gene family AT1G12840 79.947 0.0 642.0
Armi14g01478 ACH 6 768 Primary Pumps ATPases gene family AT1G15690 88.073 0.0 1367.0
Armi15g00027 . 50 157 Primary Pumps ATPases gene family AT4G09650 28.44 2.75e-09 53.1
Armi15g00032 . 3 1051 Primary Pumps ATPases gene family AT4G00900 75.38 0.0 1623.0
Armi15g00632 . 1 203 Primary Pumps ATPases gene family AT5G47030 71.845 1.70e-107 305.0
Armi15g01567 . 39 383 Primary Pumps ATPases gene family AT1G15700 70.145 1.63e-174 489.0
Armi15g01677 . 52 851 Primary Pumps ATPases gene family AT1G16780 85.75 0.0 1407.0
Armi16g00223 . 1 70 Primary Pumps ATPases gene family AT5G55290 85.714 1.74e-41 127.0
Armi16g00484 . 2 1021 Primary Pumps ATPases gene family AT3G57330 67.742 0.0 1439.0
Armi16g01123 . 1 1061 Primary Pumps ATPases gene family AT1G07670 78.437 0.0 1695.0
Armi16g01423 . 44 160 Primary Pumps ATPases gene family AT1G20260 35.043 6.26e-07 46.6
Armi16g01630 . 2 1016 Primary Pumps ATPases gene family AT3G63380 67.449 0.0 1348.0
Armi16g01632 . 23 337 Primary Pumps ATPases gene family AT3G63380 57.911 1.06e-112 349.0
Armi16g01633 . 366 1017 Primary Pumps ATPases gene family AT3G63380 72.576 0.0 974.0
Armi17g00058 . 65 494 Primary Pumps ATPases gene family AT5G04930 62.243 0.0 564.0
Armi17g01051 . 1 1061 Primary Pumps ATPases gene family AT1G07810 80.151 0.0 1734.0
Armi17g01574 . 24 1014 Primary Pumps ATPases gene family AT3G63380 55.162 0.0 980.0
Armi17g01590 . 6 1016 Primary Pumps ATPases gene family AT3G63380 69.874 0.0 1367.0
Armi18g00129 . 1 1178 Primary Pumps ATPases gene family AT3G27870 73.041 0.0 1808.0
Armi18g00170 . 1 956 Primary Pumps ATPases gene family AT5G62670 87.513 0.0 1699.0
Armi18g00173 ACH 1 351 Primary Pumps ATPases gene family AT3G28710 93.447 0.0 701.0
Armi18g00309 . 135 160 Primary Pumps ATPases gene family AT1G12840 65.385 3.41e-06 43.9
Armi18g00404 . 1 1014 Primary Pumps ATPases gene family AT4G37640 80.197 0.0 1668.0
Armi18g01394 . 6 1158 Primary Pumps ATPases gene family AT5G04930 69.423 0.0 1682.0
Armi18g01429 . 1 1001 Primary Pumps ATPases gene family AT5G44790 74.308 0.0 1513.0