AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00914 ATGATACGAGCGGTGATAGTAATGAACGACCAAGGCAAGCCTCGCCTTGTCAAATTCTACGAGCATCAGCCCGTGGAGAAACAACAAGAAATCATTCGGAGCATATATGGAGTTCTATGCAGTAGAGCGGAGAATGTGAGCAACTTTGTTCAAGCAGATTCAGGTTTTGGACCGGATACTAGACTTGTATACAAGACTTTTGCTACACTGTACTTCATTGTCATATTTGATGATTCTGAAAATGAGCTTGCCATTCTAGATCTTATGCAAGTATTTGTGGAGACGTTGGACAAGTGTTTCAGTAATGTTTGTGAGCTTGATATAGTGTTCAATTTCAACAAGGTACATACCATCCTGGATGAGATTATTTTGGGAGGTCAAGTTATTGAAATGAGTTCTTCTGAAGTTGTAAAGGCAGTAGATGGCATATCTTGGCTGGAGAAGAACCCAAATTCAATCCTTCGAGTTCCAAAATCCTTATCTGGTTGGCAGGGACGATAA 501 40.52 MIRAVIVMNDQGKPRLVKFYEHQPVEKQQEIIRSIYGVLCSRAENVSNFVQADSGFGPDTRLVYKTFATLYFIVIFDDSENELAILDLMQVFVETLDKCFSNVCELDIVFNFNKVHTILDEIILGGQVIEMSSSEVVKAVDGISWLEKNPNSILRVPKSLSGWQGR 166
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00914 166 ProSitePatterns Clathrin adaptor complexes small chain signature. 62 72 IPR000804 GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030117(InterPro)
Armi1g00914 166 PIRSF AP-complex-sigma 1 155 IPR016635 GO:0015031(InterPro)
Armi1g00914 166 Pfam Clathrin adaptor complex small chain 1 141 IPR022775 -
Armi1g00914 166 FunFam AP complex subunit sigma 1 156 - -
Armi1g00914 166 Gene3D - 1 157 - -
Armi1g00914 166 CDD AP3-sigma 1 144 IPR027155 GO:0006896(InterPro)|GO:0030123(InterPro)
Armi1g00914 166 PANTHER ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY 2 143 IPR016635 GO:0015031(InterPro)|GO:0016192(PANTHER)|GO:0043231(PANTHER)
Armi1g00914 166 SUPERFAMILY SNARE-like 1 142 IPR011012 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00914 K12399 AP-3 complex subunit sigma
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr18:16870865 Armi1g00914 Armi-Chr1:24237222 dispersed
Armi Armi-Chr1:24237222 Armi1g04568 Armi-Chr1:191650495 dispersed
Armi Armi-Chr1:24237222 Armi6g02020 Armi-Chr6:54153312 transposed