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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00923 ATGCATCATCTTCTTCTTCTTCATTCCCCCACACTTTGCTCTTCCTCTCCGCTTCCCCACCGCCACCTTCAGTTCCCCACGCGCCACCGCCAAAACCTCCGCTACCTCAAATCCCTCGGTATCAACCCACCGGATTCCCACTCCCCTCAAACCCTATCTCAAATCCTATCAACCTTAAACTACTTCAAATCCAAAGGCTTTTCCGACTCCGATTTCCCCCGAATTGCCTTCCTCTCCCCGCATCTCTTCGCCCCGACCTTCGATCCCATCGCCATCGAACCCGTTTTCGATTTCTTAACCCTCGATTTAGCCGCATCGCCGGAGGAGGTACGTGGCTTGATCCTCAAATGCCCTCACATCCTCGAATCCGACCCGGAGTTGTGCTTGAAACCGACGCTCGATTACCTCAAAAAGTTGGGGATTAAGCGGTTGAAGTCACCAACAACCTTGAATGCTCATCTACTGGATACAAGAGTGGGTAAATTGGAAGAGAAAATGAGGTTTTTACGAGGCGTTGGGTTTTCGGACGAGGAATCGAGGAGGATATGCGGGCGGTTTCCCGCGATATTCGGGTACGGTGTCGAGCATAATTTACGACCGAAGTTTGAGTATTTGAGGAGGGAGATGAAGAGGAATGGTAGGGAGGAAGTGAACAAGTTTCCACAGTATTTTGGGTTCAGTTTGGAGAAGAGGATAAAGCCCAGATATGTGCATTTGAAACAGAGGAATGTTGATGGTGAGGTACCATTGAATAGGATGTTGCTGTGGAGTGATGAAAGATTTTTCAAGAAATGGAAATAA 801 48.69 MHHLLLLHSPTLCSSSPLPHRHLQFPTRHRQNLRYLKSLGINPPDSHSPQTLSQILSTLNYFKSKGFSDSDFPRIAFLSPHLFAPTFDPIAIEPVFDFLTLDLAASPEEVRGLILKCPHILESDPELCLKPTLDYLKKLGIKRLKSPTTLNAHLLDTRVGKLEEKMRFLRGVGFSDEESRRICGRFPAIFGYGVEHNLRPKFEYLRREMKRNGREEVNKFPQYFGFSLEKRIKPRYVHLKQRNVDGEVPLNRMLLWSDERFFKKWK 266
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00923 266 SMART mt-12 145 175 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Armi1g00923 266 SMART mt-12 214 245 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Armi1g00923 266 SMART mt-12 180 212 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Armi1g00923 266 SMART mt-12 111 142 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Armi1g00923 266 Pfam mTERF 102 261 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Armi1g00923 266 Gene3D Transcription termination factor 3, mitochondrial 47 266 IPR038538 -
Armi1g00923 266 PANTHER CGI-12 PROTEIN-RELATED 47 264 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00923 K15031 mitochondrial transcription termination factor family protein
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Armi mTERF 1.4e-35 No_clan TR mTERF