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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00967 ATGGGGATTTGCACCTCATGCTACTCCGGCAGCAACCCCGCCACGGTCAAACTCATCCTCTTAGACGGCGAACTTAGAGAATTTTCGTCGCCGGTGAAGGTGTTCCTGGTGGCACCACCCTTACACTTGGAGAATAATGATCTGTCCTCGTTCATTTGCAACGCGGATGAGATGGATTTTGATCAGTACCTTACCGCCATGAACGGAGAGGATGAGCTTCGTTTGGGTCATCTGTATTTTCAGCTGCCGTGGAGCTGGTTGAACAGGCGGTTAGCGGCGGAGGATATGGCTTCACTGGCGGTTAAAGCCGGTAGGGCACTTACGGATAGTCGTAGTGGTAAGGTGAGATGCGGGTGTTGTGTTACACGGGTTGACCCGGTGGTACTGTTTGGTGATGGGGATGAAATGATAACATCTTCCTGGAGTTGGCTTGGAGGTGGTGGTGGCAACCACAGTCATGGTGGTAAACGGCGGATGTTTACAAGACTTGAAAGGATAGTGGAGGAGTGA 510 51.76 MGICTSCYSGSNPATVKLILLDGELREFSSPVKVFLVAPPLHLENNDLSSFICNADEMDFDQYLTAMNGEDELRLGHLYFQLPWSWLNRRLAAEDMASLAVKAGRALTDSRSGKVRCGCCVTRVDPVVLFGDGDEMITSSWSWLGGGGGNHSHGGKRRMFTRLERIVEE 169
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00967 169 PANTHER DUF4228 DOMAIN PROTEIN-RELATED 13 113 - -
Armi1g00967 169 Pfam PADRE domain 1 112 IPR025322 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00967 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr18:7788511 Armi1g00967 Armi-Chr1:26180596 dispersed
Armi Armi-Chr1:26180596 Armi4g02847 Armi-Chr4:111957345 dispersed
Armi Armi-Chr1:26180596 Armi13g00419 Armi-Chr13:9623428 wgd