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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00971 ATGGATGACGTACCAGGATCCATGGGTACCAGCGCAGGATTCGCTCTCAGGCTCGGTCAGACCATCTTCTCCTCTGCTGCTCTTCTCTTCATGTCTCTTGGTGGTCAATTCTACAGCTATACCTCCTTCTGCTTCTTGGTGACGATCATGGGTTTGGTTATACCATGGAGTTTCACATTGGCACTCCTTGATGGATACTCTGTTCTCATTACCCACCCAGTTCGACAAAAGGGAATCTTGTTCATCATCATTATAGGGGATTGGGTGTTGTTGACTCTCACACTAGCGGCAGCCTCTTCAGCTGCAGCCGTGGTGGATATCTTGCTGAGGGCAGATGGGTCCGTCTGCCCTCCAAAAATCTGCAGCCGCTATCTACTTTCTACCATATTTGCTTTCTTGTCATGGTTCTTGTCTATGGCTTCTTCTCTATTCAATCTATGGCTTCTTCCATCTTTGTGA 459 47.71 MDDVPGSMGTSAGFALRLGQTIFSSAALLFMSLGGQFYSYTSFCFLVTIMGLVIPWSFTLALLDGYSVLITHPVRQKGILFIIIIGDWVLLTLTLAAASSAAAVVDILLRADGSVCPPKICSRYLLSTIFAFLSWFLSMASSLFNLWLLPSL 152
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00971 152 Pfam Casparian strip membrane protein domain 8 137 IPR006702 -
Armi1g00971 152 PANTHER CASP-LIKE PROTEIN 5B3 1 151 IPR045009 GO:0016020(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00971 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr1:26219433 Armi13g00420 Armi-Chr13:9646855 wgd
Armi Armi-Chr1:26219433 Armi18g00287 Armi-Chr18:7795099 wgd