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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g01027 ATGTCATCGGTTTTTGGGTGGGGAAAGATCATAACCTCCGATGAATATCTCCTCCAAATCAATGGCTTCCTACGAGTTCACAAAGATGGCCGATGTGAAAGATTCGTCGGCAATAAAACCGTCCCCACCGGAATCGATCTTTCAACCGGAGTTCAATCAAAAGACGTCGTCATCTCGCCGGAAAACAACCTCTCAGTCAGGCTTTACTTCCCCAAAACCACCTCCCAAAATAAAAAACTTCCGGTTCTGATTTACTATCACGGCGGTGGTTTCGTGGTGGAATCCGCCAAATCTCCTTCTTATCACCCAACACTCAATCTTCTCGCGGCGAATTCCGGCGTAATCGTCGTCTCCGTCGACTACCGCTTGGCGCCGGAGTATCTTCTCCCAATTGCATACAACGATTCATGGGAAGCGATCAAGTGGGTCTCCGCCCATGGTAGAGAAGGTGGTCCGGAGCCATGGTTAAACGACGTCGCGGATTTTGAAAAGGTGTTTCTCGCCGGAGATAGTGCCGGGGCGAATATCGCCCACAACATGGCAATCCGGTTCGGGTCATACCCGACAGACGGAATAAATCTGGAGGGTGTTATTCTTCTCCACCCGTTTTTTGGAGGAGAAGACCCGATTGGATCCGAATGTGGGAAACACCAGCAGTTGAAAGCTTTCACGGATCAGTTTTGGAAGTTGGCGAATCCTTCAGGTAGTGGGTTGGATGACCCGTTGTTTAACCCGGAAAAGGACCCGAATCTTGGGGGATTTGGGTGCTCCAAGATTCTTGTATGTGTTGCAGAGAAGGATTCTTTGAGGGATAGGGGGGTAAATTACAGAGAGTTAATGGAGAAAAGTGGATGGATTGGAGAATTGGAAATGATGGAGACGAAAGGAGAAGATCATGTGTTTTTTCTGTTTAATCCTTCATGTGAGAATGCTTGTAGTTTGCATAACAGAGTGTGTACCTTCATCAATCAGACTCGTTATCAGTCCCGATGTTGA 996 47.79 MSSVFGWGKIITSDEYLLQINGFLRVHKDGRCERFVGNKTVPTGIDLSTGVQSKDVVISPENNLSVRLYFPKTTSQNKKLPVLIYYHGGGFVVESAKSPSYHPTLNLLAANSGVIVVSVDYRLAPEYLLPIAYNDSWEAIKWVSAHGREGGPEPWLNDVADFEKVFLAGDSAGANIAHNMAIRFGSYPTDGINLEGVILLHPFFGGEDPIGSECGKHQQLKAFTDQFWKLANPSGSGLDDPLFNPEKDPNLGGFGCSKILVCVAEKDSLRDRGVNYRELMEKSGWIGELEMMETKGEDHVFFLFNPSCENACSLHNRVCTFINQTRYQSRC 331
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g01027 331 ProSitePatterns Lipolytic enzymes G-D-X-G family, putative serine active site. 165 177 IPR033140 -
Armi1g01027 331 Gene3D alpha-beta hydrolase 17 324 IPR029058 -
Armi1g01027 331 Pfam alpha-beta hydrolase fold 83 302 IPR013094 GO:0016787(InterPro)
Armi1g01027 331 PANTHER ARYLACETAMIDE DEACETYLASE 22 314 IPR050466 -
Armi1g01027 331 SUPERFAMILY alpha-beta-Hydrolases 51 325 IPR029058 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g01027 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
20354 Armi1g01027 Armi7g00534
20355 Armi1g01027 Armi8g02080
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr12:14196748 Armi1g01027 Armi-Chr1:28044455 dispersed
Armi Armi-Chr1:28044455 Armi7g00534 Armi-Chr7:10688205 dispersed
Armi Armi-Chr1:27979231 Armi1g01027 Armi-Chr1:28044455 proximal
Armi Armi-Chr9:37855543 Armi1g01027 Armi-Chr1:28044455 transposed
Armi Armi-Chr1:28044455 Armi8g00436 Armi-Chr8:9776262 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Armi1g00264 . 79 380 Carbohydrate Esterase gene family AT5G55590 70.297 8.03e-148 421.0
Armi1g01022 ACH 4 315 Carbohydrate Esterase gene family AT1G19190 40.764 8.85e-82 248.0
Armi1g01027 ACH 4 321 Carbohydrate Esterase gene family AT3G48690 45.912 4.72e-90 270.0
Armi1g01929 . 15 543 Carbohydrate Esterase gene family AT3G05620 66.418 0.0 719.0
Armi1g02084 . 1 416 Carbohydrate Esterase gene family AT5G26670 68.558 0.0 601.0
Armi1g04403 . 6 282 Carbohydrate Esterase gene family AT2G41530 83.453 1.95e-179 494.0
Armi1g04473 . 1 612 Carbohydrate Esterase gene family AT2G26450 47.68 0.0 576.0
Armi1g04479 . 58 211 Carbohydrate Esterase gene family AT3G05610 26.623 3.39e-16 73.9
Armi1g04901 . 33 518 Carbohydrate Esterase gene family AT4G02320 52.209 0.0 520.0
Armi1g04951 . 1 588 Carbohydrate Esterase gene family AT2G47030 37.724 1.72e-130 392.0
Armi2g00049 . 13 592 Carbohydrate Esterase gene family AT3G14310 65.705 0.0 755.0
Armi2g00050 . 4 582 Carbohydrate Esterase gene family AT1G53840 54.872 0.0 638.0
Armi2g03291 . 41 312 Carbohydrate Esterase gene family AT5G16080 38.542 1.14e-53 177.0
Armi2g03366 . 35 312 Carbohydrate Esterase gene family AT5G16080 37.113 1.23e-50 169.0
Armi2g03390 . 71 225 Carbohydrate Esterase gene family AT5G53370 24.706 6.41e-06 44.3
Armi2g03392 . 37 536 Carbohydrate Esterase gene family AT5G51490 52.756 0.0 543.0
Armi2g03878 . 259 341 Carbohydrate Esterase gene family AT3G05120 38.095 3.78e-11 55.5
Armi2g03880 . 29 324 Carbohydrate Esterase gene family AT5G16080 35.644 8.21e-53 175.0
Armi2g03961 . 1 359 Carbohydrate Esterase gene family AT5G61570 49.727 4.32e-110 323.0
Armi3g00344 . 75 226 Carbohydrate Esterase gene family AT5G53370 28.221 1.25e-17 79.0
Armi3g00469 . 9 331 Carbohydrate Esterase gene family AT1G68620 52.096 5.28e-116 338.0
Armi3g00876 . 28 342 Carbohydrate Esterase gene family AT5G16080 34.639 4.71e-59 191.0
Armi3g01169 . 63 159 Carbohydrate Esterase gene family AT4G02300 27.523 8.56e-06 43.5
Armi3g01873 . 42 204 Carbohydrate Esterase gene family AT1G25141 26.702 1.99e-08 52.8
Armi3g02465 . 1 587 Carbohydrate Esterase gene family AT5G53370 63.105 0.0 780.0
Armi3g02743 . 51 218 Carbohydrate Esterase gene family AT1G53830 34.911 2.96e-25 100.0
Armi3g02744 ACH 62 216 Carbohydrate Esterase gene family AT1G53830 34.839 2.08e-23 95.1
Armi3g02745 ACH 59 216 Carbohydrate Esterase gene family AT3G14310 23.418 2.33e-14 68.9
Armi3g02753 ACH 59 218 Carbohydrate Esterase gene family AT3G14310 29.878 6.08e-22 90.9
Armi3g02770 ACH 62 216 Carbohydrate Esterase gene family AT1G53830 38.065 3.37e-26 103.0
Armi3g02772 ACH 51 216 Carbohydrate Esterase gene family AT1G53830 34.132 2.48e-24 97.8
Armi3g02775 . 36 540 Carbohydrate Esterase gene family AT5G51500 51.479 0.0 535.0
Armi3g02801 . 33 359 Carbohydrate Esterase gene family AT5G61570 52.907 4.73e-117 342.0
Armi3g02846 . 3 359 Carbohydrate Esterase gene family AT1G69940 50.278 2.22e-134 386.0
Armi3g03986 . 31 422 Carbohydrate Esterase gene family AT3G02410 61.055 1.80e-179 508.0
Armi3g04210 . 18 554 Carbohydrate Esterase gene family AT1G23200 52.468 0.0 527.0
Armi3g04211 . 59 219 Carbohydrate Esterase gene family AT3G14310 27.273 3.73e-15 71.2
Armi3g04212 . 87 238 Carbohydrate Esterase gene family AT3G49220 32.298 4.32e-16 73.9
Armi4g00149 . 32 201 Carbohydrate Esterase gene family AT1G25141 26.984 5.91e-06 45.1
Armi4g01198 . 502 585 Carbohydrate Esterase gene family AT5G53370 53.571 2.91e-25 95.9
Armi4g02035 . 36 546 Carbohydrate Esterase gene family AT5G09760 67.188 0.0 710.0
Armi4g02036 . 33 546 Carbohydrate Esterase gene family AT5G09760 62.451 0.0 657.0
Armi4g02064 . 1 342 Carbohydrate Esterase gene family AT3G05120 77.874 0.0 563.0
Armi4g02592 . 1 342 Carbohydrate Esterase gene family AT5G16080 53.009 4.61e-117 340.0
Armi4g03116 ACH 1 446 Carbohydrate Esterase gene family AT5G14310 67.811 0.0 624.0
Armi4g04389 . 1 359 Carbohydrate Esterase gene family AT5G61570 50.933 1.79e-111 328.0
Armi4g04423 . 82 594 Carbohydrate Esterase gene family AT3G47400 54.175 0.0 564.0
Armi4g04424 ACH 51 222 Carbohydrate Esterase gene family AT1G53830 32.571 4.54e-22 91.3
Armi4g04425 ACH 59 216 Carbohydrate Esterase gene family AT3G14310 25.949 1.47e-16 75.1
Armi4g04426 ACH 53 216 Carbohydrate Esterase gene family AT3G14310 27.108 1.70e-17 77.8
Armi4g04430 . 11 511 Carbohydrate Esterase gene family AT2G45220 62.475 0.0 664.0
Armi4g04431 . 2 511 Carbohydrate Esterase gene family AT2G45220 38.764 2.07e-124 372.0
Armi4g04432 . 2 511 Carbohydrate Esterase gene family AT2G45220 40.076 5.19e-132 392.0
Armi4g04438 . 7 511 Carbohydrate Esterase gene family AT2G45220 40.494 1.28e-127 380.0
Armi4g04439 . 6 511 Carbohydrate Esterase gene family AT2G45220 41.176 1.23e-134 398.0
Armi4g04535 . 8 407 Carbohydrate Esterase gene family AT5G23870 63.342 0.0 541.0
Armi4g04615 . 41 597 Carbohydrate Esterase gene family AT3G49220 68.134 0.0 794.0
Armi4g04616 . 495 709 Carbohydrate Esterase gene family AT5G36210 21.778 9.79e-06 47.4
Armi5g00086 ACH 53 213 Carbohydrate Esterase gene family AT3G14310 28.221 9.69e-20 84.7
Armi5g00612 . 1 384 Carbohydrate Esterase gene family AT4G19420 49.616 5.84e-148 423.0
Armi5g00615 . 1 375 Carbohydrate Esterase gene family AT4G19420 53.439 1.64e-155 442.0
Armi5g00621 . 7 554 Carbohydrate Esterase gene family AT1G23200 40.82 5.47e-129 384.0
Armi5g00699 . 12 567 Carbohydrate Esterase gene family AT3G05610 46.429 0.0 540.0
Armi5g00784 . 25 206 Carbohydrate Esterase gene family AT1G25141 27.027 1.85e-07 49.7
Armi5g00998 . 1 446 Carbohydrate Esterase gene family AT5G14310 61.074 0.0 536.0
Armi5g02075 . 26 324 Carbohydrate Esterase gene family AT1G24793 57.525 4.28e-125 359.0
Armi5g02836 . 30 330 Carbohydrate Esterase gene family AT1G68620 39.355 5.88e-71 221.0
Armi6g00098 . 18 332 Carbohydrate Esterase gene family AT2G19150 42.47 2.39e-87 265.0
Armi6g00674 . 28 334 Carbohydrate Esterase gene family AT5G16080 32.268 7.57e-52 172.0
Armi6g00979 . 411 518 Carbohydrate Esterase gene family AT4G02320 53.704 5.05e-34 121.0
Armi6g02046 . 239 566 Carbohydrate Esterase gene family AT5G49180 56.667 5.28e-132 400.0
Armi6g02166 . 19 362 Carbohydrate Esterase gene family AT5G47500 75.0 0.0 539.0
Armi6g02561 . 493 695 Carbohydrate Esterase gene family AT5G36210 27.65 3.40e-18 87.4
Armi6g02562 . 68 389 Carbohydrate Esterase gene family AT1G05310 70.497 0.0 507.0
Armi7g00011 . 1 582 Carbohydrate Esterase gene family AT1G53840 58.824 0.0 685.0
Armi7g00013 . 50 592 Carbohydrate Esterase gene family AT3G14310 62.138 0.0 672.0
Armi7g00014 . 54 592 Carbohydrate Esterase gene family AT3G14310 64.022 0.0 708.0
Armi7g00454 . 12 359 Carbohydrate Esterase gene family AT5G47500 38.746 5.43e-84 257.0
Armi7g00534 ACH 4 326 Carbohydrate Esterase gene family AT3G48700 43.519 4.24e-88 266.0
Armi7g01310 . 2 313 Carbohydrate Esterase gene family AT1G19190 37.309 6.34e-67 211.0
Armi7g02225 . 71 357 Carbohydrate Esterase gene family AT5G47500 49.477 9.17e-101 301.0
Armi7g02476 . 59 583 Carbohydrate Esterase gene family AT1G53830 43.364 2.49e-138 413.0
Armi8g00995 . 2 326 Carbohydrate Esterase gene family AT3G48700 40.841 5.00e-81 248.0
Armi8g01135 . 4 416 Carbohydrate Esterase gene family AT5G26670 66.114 0.0 593.0
Armi8g02080 ACH 3 325 Carbohydrate Esterase gene family AT3G48700 39.628 1.29e-77 239.0
Armi9g00050 . 58 361 Carbohydrate Esterase gene family AT5G47500 38.312 1.36e-75 236.0
Armi9g00315 . 91 388 Carbohydrate Esterase gene family AT1G05310 56.04 5.74e-123 360.0
Armi9g00316 . 198 390 Carbohydrate Esterase gene family AT1G05310 56.995 4.96e-83 249.0
Armi9g00418 . 21 729 Carbohydrate Esterase gene family AT5G36210 70.308 0.0 1031.0
Armi9g01604 . 4 327 Carbohydrate Esterase gene family AT3G48700 45.37 1.67e-93 280.0
Armi10g00113 . 66 218 Carbohydrate Esterase gene family AT1G53830 27.95 8.27e-14 67.0
Armi10g00114 ACH 53 213 Carbohydrate Esterase gene family AT3G14310 28.221 2.01e-18 81.3
Armi10g00115 . 62 216 Carbohydrate Esterase gene family AT1G53830 29.936 8.98e-16 73.2
Armi10g00627 . 6 389 Carbohydrate Esterase gene family AT4G19420 62.338 0.0 524.0
Armi10g00628 . 7 389 Carbohydrate Esterase gene family AT4G19420 64.675 0.0 552.0
Armi10g00856 . 11 375 Carbohydrate Esterase gene family AT4G19420 52.861 1.03e-154 440.0
Armi10g00857 . 3 375 Carbohydrate Esterase gene family AT4G19420 53.175 5.41e-154 438.0
Armi10g01984 . 12 511 Carbohydrate Esterase gene family AT2G45220 66.928 0.0 697.0
Armi10g01992 . 13 511 Carbohydrate Esterase gene family AT2G45220 62.598 0.0 649.0
Armi10g01994 ACH 56 220 Carbohydrate Esterase gene family AT1G53830 26.163 3.38e-12 62.8
Armi10g02044 ACH 59 329 Carbohydrate Esterase gene family AT5G16080 32.258 6.45e-42 146.0
Armi12g00011 . 49 592 Carbohydrate Esterase gene family AT3G14310 58.152 0.0 617.0
Armi12g00012 . 40 592 Carbohydrate Esterase gene family AT3G14310 52.021 0.0 550.0
Armi12g00642 . 4 325 Carbohydrate Esterase gene family AT3G48700 46.462 4.44e-98 292.0
Armi13g00050 ACH 1 446 Carbohydrate Esterase gene family AT5G14310 67.742 0.0 622.0
Armi13g00237 ACH 59 362 Carbohydrate Esterase gene family AT5G47500 38.608 2.91e-72 226.0
Armi14g00076 . 2 247 Carbohydrate Esterase gene family AT1G53840 36.538 1.75e-38 139.0
Armi15g00271 . 62 306 Carbohydrate Esterase gene family AT1G68620 36.863 1.10e-46 159.0
Armi15g00272 ACH 36 321 Carbohydrate Esterase gene family AT5G16080 33.11 6.20e-49 165.0
Armi15g00385 . 75 224 Carbohydrate Esterase gene family AT5G53370 28.571 9.60e-12 61.6
Armi15g00392 ACH 49 220 Carbohydrate Esterase gene family AT1G53830 26.374 7.46e-09 53.1
Armi15g00395 . 39 225 Carbohydrate Esterase gene family AT5G53370 26.829 4.40e-12 62.4
Armi15g00397 ACH 39 224 Carbohydrate Esterase gene family AT5G53370 26.263 2.98e-10 57.0
Armi15g00402 . 11 511 Carbohydrate Esterase gene family AT2G45220 66.411 0.0 702.0
Armi16g01722 ACH 1 343 Carbohydrate Esterase gene family AT3G63010 74.063 0.0 544.0
Armi16g01789 . 62 216 Carbohydrate Esterase gene family AT3G14310 31.646 1.56e-16 75.1
Armi16g01808 . 9 571 Carbohydrate Esterase gene family AT4G02330 51.06 0.0 584.0
Armi16g01811 . 1 577 Carbohydrate Esterase gene family AT1G02810 57.167 0.0 652.0
Armi16g01812 . 34 518 Carbohydrate Esterase gene family AT4G02320 51.411 5.95e-177 508.0
Armi16g01813 . 49 532 Carbohydrate Esterase gene family AT4G02300 52.13 5.12e-179 514.0
Armi16g01857 . 18 560 Carbohydrate Esterase gene family AT5G49180 34.798 1.62e-97 306.0
Armi17g00088 . 116 218 Carbohydrate Esterase gene family AT1G53830 33.654 1.35e-13 63.9
Armi17g00431 . 76 427 Carbohydrate Esterase gene family AT3G09410 67.614 0.0 527.0
Armi17g01680 ACH 1 358 Carbohydrate Esterase gene family AT3G63010 73.204 0.0 548.0
Armi17g01741 . 2 571 Carbohydrate Esterase gene family AT4G02330 59.019 0.0 674.0
Armi18g00201 ACH 59 362 Carbohydrate Esterase gene family AT5G47500 37.736 1.28e-70 221.0
Armi18g00265 . 41 422 Carbohydrate Esterase gene family AT3G02410 73.298 0.0 598.0
Armi18g00271 . 369 422 Carbohydrate Esterase gene family AT3G02410 70.37 1.98e-21 83.6
Armi18g01370 . 5 561 Carbohydrate Esterase gene family AT3G10710 54.24 0.0 619.0