AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g01074 ATGGAGATTGCTCCGGCGGTGCTGCCAGCACACGACGGTGTCGGAAACGCACCGGATTCTTCATCTTCATCGGATTCATCTGCTTCGACGTTAACATCAGACACTATTTCTGTCAATAACAATAATTTGTCGACCAACAGGTATGATGACGAGGATGACGAAGAGGAAGATGTTTGCCGGATCTGCCGGAATCCGGGAGACGCCGATAATCCTCTTCGATATCCTTGTGCTTGTAGCGGTAGTATTAAGTTTGTTCACCAAGACTGCCTTCTCCAGTGGCTCAACCACAGCAACGCTCGCCACTGCGAGGTTTGCAAGCACCCCTTTTCGTTCTCCCCTGTGTATGCTGAGAACGCCCCGGCAAGGCTTCCTTTTCAGGAGTTTGTTATTGGAATGGCAATGAAAGCCTGTCATGTGTTGCAATTCTTTCTGCGGCTAAGTTTCGTGCTTTCTGTATGGCTTTTGATCATACCATTTATTACTTTCTGGATTTGGCGCTTCTCATTTGTTCGGAGTTTTGGTGAAGCCCAGAGACTGTTCTTGAGTCATATTTCCAGTACGGTTATTCTCACTGACTGTCTTCATGGGTTCCTGCTCTCTGCAAGCATCGTATTTATTTTTCTTGGGGCCACATCTTTGAGGGATTATTTTAGACATTTACGAGAACTTGGTGGCCAGGAGGGTGGCAGAGAGGAGGAAGGAGATAGAAACGCTGCTCGTGTTGCAAGGAGACAACCTGCACAACCTAACAGAAACCTTATTGGTGAAGGGAATGGTGAAGATGTTGGGGTACAAGGGATTGCTGGGGCTGGTCAGATGATTAGAAGAAATGCAGAAAATGTTGCAGCCAGGTGGGAGATGCAAGCAGCTCGTCTCGAGGCACATGTTGAACAAATGTTTGATGGTTTGGATGATGCGGACGGTGCAGAGGATGTTCCTTTTGATGAGCTAGTTGGCATGCAGGGGCCTGTTTTTCATTTGGTGGAAAATGCATTTACTGTTCTTGCAAGCAATATGATATTTCTTGGTGTTATAATCTTTATCCCCTTCCACCTAGGACGATTTATCCTCTACCATCTGCTGTGGATTTTATCGTCTGCCACCAGCCCAATGTTGTCGACTGTTGTACCATTTACAGAGCAAGCACTTTCTTTGGCCAATATTACATTAAAGAATGCACTGACTGCAGTCACGAATTTGACATATGAGAAAAATCCAGATGACGGTGTGCTTGGCCATGTTGCTGAGATGTTAGATGTGAATGCTACTGGATTTAATGAGTCATCGAACAACGTCACCTCTCCCGTTTTAGTTGATATTCTGAAAGGGGCAATTACTGGGGCATCAAGATTATCTGATGTTACAACTCTTGCCGTTGGCTATATGACCATCTTCTCACTTGTTATTTTCTATCTTGGAGTTGTTGCACTGATTAGGTACACCAGGGGAGAATCTTTGACTATTGGAAGGTTCTATGGTATTGCTTCAATTGCAGAGGCAATTCCTTCACTTTTCAGGCAGTTCTTGGCTGCAATGAGACATTTAATGACTATGATAAAGGTTGCGTTCCTTTTGGTCATCGAACTAGGGGTGTTCCCTCTAATGTGTGGATGGTGGCTAGATGTTTGTACTATAAGGATGTTTGGCAAGTCAATTACTCAAAGAGTTGAATTCTTTTCGGTTTCTCCACTGGCAAGCTCATTAATTCATTGGGTTGTAGGGATCGTCTACATGTTACAAATATCCATATTTGTCAGTCTTCTTCGAGGGGTTTTGCGTAATGGAGTTCTTTATTTCCTGCGAGATCCAGCTGACCCTAATTACAATCCATTCAGGGATCTGATTGATGATCCTGTGCACAAGCATGCTCGTAGGGTTTTCTTGTCTGTTGCTGTATATGGGAGCTTAATTGTAATGCTGGTATTTTTGCCAGTTAAACTTGCTATGCGAATGGCTCCTTCGATCTTTCCTCTTGATATATCAGTATCTGATCCATTCACTGAGATTCCAGCTGACATGCTTCTCTTCCAAATTTGCATTCCATTTGCTGTTGAGCATTTTAAGTTGCGGTCAACGATCAAGTCGCTTCTGCGCTATTGGTTTACTGCGATTGGCTGGGCACTTGGTTTAACAGGTTACTTGTTGCCCACACCTGAGGACATTGGTGCGCAAGAAAATGGGAATGATCCTGTAAGGCAGGATAGAGCACATGCTCAACTAGGGGGCCAAGATCAAATAATTGGATATTTGGCCCCCGAAGATTTCAACCGAGCAAGGCTTGCGGGTGTCGATGCTAATGTTGCAGAAGAAGCTGATGCTGATGAACAATCTGATTCAGAGAGGTATATGTTTGTGCTCTGTATCGTGCTGCTTTTATTGGCAGCTTGGATGACATTGCTGATTGTAAATTCTGCTTTAATTGTGGTTCCCGTATCCCTTGGACGAGTGCTGTTCAATGCAGTTCCCCTTCTTCCTATCACACATGGCATCAAATGCAATGACATATATGCATTTGTTATTGGAAGTTATGTGGCCTGGACTGCACTGGCTGGCATAAGGTATTCCGTTGATCAAATTAGGACAAGGAAAGCCACAGTTTTATTAGGTCAAATCTGGAAATGGTGTTCCATTGTTGTGAAGAGTTCTGTACTGTTGTCAATTTGGATCTTTGTCATCCCAGTGTTGATTGGACTGCTGTTTGAACTTTTGGTGATTGTACCAATGAGGGTGCCTGTGGATGAAAGCCCCGTGTTTCTGTTGTATCAGGATTGGGCTCTTGGACTTATTTTTCTCAAAATCTGGACTCGACTGGTAATGCTGGATCATATGCTGCCTCTTGTGGATGACAGCTGGCGAGTGAAGTTCGAAAGAGTTCGAGAAGATGGATTCTCGAGGCTGGAAGCCTTTTGGGTGGTACGAGAGATTGTGGTCCCCATCATGATGAAGCTTCTGACGGCTCTGTGTGTCCCTTACGTATTAGCTCGAGGAGTATTTCCTGTATTTGGGTACCCGTTAGTGGTTAACTCGGCCGTCTACAGGTTTGCATGGGTGGGATGCCTTGGCCTCAGTTTGTTATGCTTTTGTGGGAAGCGTTTCCATGTGTGGTTCACCAACCTCCACAACTCGATAAGAGACGATCGCTATTTGATTGGGCGGAGACTTCATAACTTTGGGGAAGATAACATAAACAGCGATGGAGAAGCAGAAGTGTCATCGGATGCACGAGATGGTAATGTAGGAGGTTTGAGGCATAGAAGACGCCATATTGGTGTTGAGAATATGTGA 3285 44.66 MEIAPAVLPAHDGVGNAPDSSSSSDSSASTLTSDTISVNNNNLSTNRYDDEDDEEEDVCRICRNPGDADNPLRYPCACSGSIKFVHQDCLLQWLNHSNARHCEVCKHPFSFSPVYAENAPARLPFQEFVIGMAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRFSFVRSFGEAQRLFLSHISSTVILTDCLHGFLLSASIVFIFLGATSLRDYFRHLRELGGQEGGREEEGDRNAARVARRQPAQPNRNLIGEGNGEDVGVQGIAGAGQMIRRNAENVAARWEMQAARLEAHVEQMFDGLDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVIIFIPFHLGRFILYHLLWILSSATSPMLSTVVPFTEQALSLANITLKNALTAVTNLTYEKNPDDGVLGHVAEMLDVNATGFNESSNNVTSPVLVDILKGAITGASRLSDVTTLAVGYMTIFSLVIFYLGVVALIRYTRGESLTIGRFYGIASIAEAIPSLFRQFLAAMRHLMTMIKVAFLLVIELGVFPLMCGWWLDVCTIRMFGKSITQRVEFFSVSPLASSLIHWVVGIVYMLQISIFVSLLRGVLRNGVLYFLRDPADPNYNPFRDLIDDPVHKHARRVFLSVAVYGSLIVMLVFLPVKLAMRMAPSIFPLDISVSDPFTEIPADMLLFQICIPFAVEHFKLRSTIKSLLRYWFTAIGWALGLTGYLLPTPEDIGAQENGNDPVRQDRAHAQLGGQDQIIGYLAPEDFNRARLAGVDANVAEEADADEQSDSERYMFVLCIVLLLLAAWMTLLIVNSALIVVPVSLGRVLFNAVPLLPITHGIKCNDIYAFVIGSYVAWTALAGIRYSVDQIRTRKATVLLGQIWKWCSIVVKSSVLLSIWIFVIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMLPLVDDSWRVKFERVREDGFSRLEAFWVVREIVVPIMMKLLTALCVPYVLARGVFPVFGYPLVVNSAVYRFAWVGCLGLSLLCFCGKRFHVWFTNLHNSIRDDRYLIGRRLHNFGEDNINSDGEAEVSSDARDGNVGGLRHRRRHIGVENM 1094
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g01074 1094 SUPERFAMILY RING-U-box 53 110 - -
Armi1g01074 1094 Coils Coil 275 295 - -
Armi1g01074 1094 SMART ringv-2 58 106 IPR011016 GO:0008270(InterPro)
Armi1g01074 1094 MobiDBLite consensus disorder prediction 1 51 - -
Armi1g01074 1094 CDD RING-CH-C4HC3-MARCH6 58 107 - -
Armi1g01074 1094 ProSiteProfiles Zinc finger RING-CH-type profile. 51 112 IPR011016 GO:0008270(InterPro)
Armi1g01074 1094 Pfam RING-variant domain 59 105 IPR011016 GO:0008270(InterPro)
Armi1g01074 1094 MobiDBLite consensus disorder prediction 16 45 - -
Armi1g01074 1094 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 43 117 IPR013083 -
Armi1g01074 1094 FunFam Probable E3 ubiquitin ligase SUD1 44 117 - -
Armi1g01074 1094 PANTHER SSM4 PROTEIN 41 1064 - GO:0030176(PANTHER)|GO:0030433(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g01074 K10661 E3 ubiquitin-protein ligase MARCH6 [EC:2.3.2.27]
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Event-related genes

Select Gene_1 Gene_2 Event_name
20369 Armi1g01074 Armi7g00581
20370 Armi1g01074 Armi8g02029
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr1:29603439 Armi7g00581 Armi-Chr7:11647089 wgd
Armi Armi-Chr1:29603439 Armi8g02029 Armi-Chr8:81589418 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Armi1g01074 ACH 38 1102 HMGR gene family AT4G34100 74.861 0.0 1613.0
Armi1g04840 . 68 119 HMGR gene family AT4G34100 40.385 2.20e-13 61.2
Armi1g04925 . 68 133 HMGR gene family AT4G34100 34.328 1.49e-09 55.8
Armi2g02953 . 68 125 HMGR gene family AT4G34100 43.103 2.55e-11 61.2
Armi2g03873 . 51 632 HMGR gene family AT1G76490 72.5 0.0 879.0
Armi3g00231 ACH 37 141 HMGR gene family AT4G34100 29.524 8.37e-10 57.8
Armi3g03536 . 51 632 HMGR gene family AT1G76490 73.613 0.0 877.0
Armi3g04135 ACH 68 129 HMGR gene family AT4G34100 37.097 6.74e-09 54.7
Armi4g02394 ACH 51 632 HMGR gene family AT1G76490 71.817 0.0 851.0
Armi5g01958 ACH 68 141 HMGR gene family AT4G34100 35.135 1.40e-09 56.6
Armi5g02209 ACH 38 129 HMGR gene family AT4G34100 32.292 7.11e-11 61.2
Armi7g00581 ACH 67 1108 HMGR gene family AT4G34100 75.119 0.0 1591.0
Armi8g02029 ACH 67 1107 HMGR gene family AT4G34100 77.151 0.0 1624.0
Armi11g00247 ACH 200 632 HMGR gene family AT1G76490 77.65 0.0 702.0
Armi11g00278 ACH 51 632 HMGR gene family AT1G76490 68.074 0.0 825.0
Armi11g00279 . 107 630 HMGR gene family AT1G76490 68.321 0.0 740.0
Armi11g01179 ACH 98 632 HMGR gene family AT1G76490 69.202 0.0 761.0
Armi12g01004 ACH 68 124 HMGR gene family AT4G34100 43.86 1.36e-09 57.4
Armi13g00804 . 68 129 HMGR gene family AT4G34100 38.71 1.05e-09 57.0
Armi14g01189 ACH 68 129 HMGR gene family AT4G34100 40.323 1.29e-09 57.0
Armi18g00888 ACH 51 632 HMGR gene family AT1G76490 71.309 0.0 869.0