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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi3g00280 ATGTCGAGCGAAAAGGAGAGAGAAAATCATGTTTATCTGGCTAAGCTCGCTGAACAAGCCGAGCGTTACGACGAAATGGTTGAAAGTATGAAGAATGTTGCCAAACTTGATGTTGAGCTGACAGTTGAAGAGCGCAACCTGCTTTCAGTTGGATACAAGAATGTCATTGGGGCAAGGAGGGCCTCTTGGCGTATTATGTCATCAATTGAACAAAAGGAGGAATCAAAAGGAAATGAGAACTATGTCAATCTGATCAAGGGATATCGCAAAAAGGTTGAGGATGAGCTTTCCAAGATTTGCAGTGACATACTTGCTATCATAGACAAGCATCTCATACCATCTTCAGGCTCAGGAGAAGCTACTGTTTTCTACTACAAGATGAAGGGTGACTACTTCCGCTACCTTGCTGAGTTCAAGACGGATGAGGAAAGAAAGGAAGCTGCAGATCAATCATTGAAAGGCTATGAGGCTGCTTCTGCTTCTGCAAATAAAGAACTCCCTTCAACCCACCCGATCCGTCTTGGCCTGGCTCTCAATTTCTCAGTGTTCTACTATGAAATTATGAACTCTCCTGAGAAGGCCTGCCATTTGGCTAAACAAGCTTTCGATGAGGCAATTGCTGAGTTGGACACTTTGAGTGAGGAATCATACAAAGACAGCACCTTGATCATGCAGCTGTTGAGAGATAACCTCACTCTGTGGACTTCTGATTTGCCCGAGGATGGAGGAGATGAAAACCCCAAAGGTGAAGAGGCAAAACCAGCTGAAGCAGAGAAGAAACAGTGA 786 44.4 MSSEKERENHVYLAKLAEQAERYDEMVESMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGNENYVNLIKGYRKKVEDELSKICSDILAIIDKHLIPSSGSGEATVFYYKMKGDYFRYLAEFKTDEERKEAADQSLKGYEAASASANKELPSTHPIRLGLALNFSVFYYEIMNSPEKACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGGDENPKGEEAKPAEAEKKQ 261
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi3g00280 261 SUPERFAMILY 14-3-3 protein 6 237 IPR036815 -
Armi3g00280 261 PRINTS 14-3-3 protein zeta signature 208 237 IPR000308 -
Armi3g00280 261 PRINTS 14-3-3 protein zeta signature 39 68 IPR000308 -
Armi3g00280 261 PRINTS 14-3-3 protein zeta signature 88 112 IPR000308 -
Armi3g00280 261 PRINTS 14-3-3 protein zeta signature 119 141 IPR000308 -
Armi3g00280 261 PRINTS 14-3-3 protein zeta signature 154 180 IPR000308 -
Armi3g00280 261 PRINTS 14-3-3 protein zeta signature 181 207 IPR000308 -
Armi3g00280 261 Coils Coil 195 215 - -
Armi3g00280 261 FunFam 14-3-3 protein epsilon 1 248 - -
Armi3g00280 261 Coils Coil 13 33 - -
Armi3g00280 261 PANTHER 14-3-3 PROTEIN 6 240 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
Armi3g00280 261 ProSitePatterns 14-3-3 proteins signature 1. 45 55 IPR023409 -
Armi3g00280 261 ProSitePatterns 14-3-3 proteins signature 2. 217 236 IPR023409 -
Armi3g00280 261 Pfam 14-3-3 protein 13 235 IPR023410 -
Armi3g00280 261 SMART 1433-4 7 248 IPR023410 -
Armi3g00280 261 MobiDBLite consensus disorder prediction 241 261 - -
Armi3g00280 261 Gene3D - 1 246 IPR036815 -
Armi3g00280 261 MobiDBLite consensus disorder prediction 235 261 - -
Armi3g00280 261 PIRSF 14-3-3 1 248 IPR000308 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi3g00280 K06630 14-3-3 protein epsilon
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr3:6144262 Armi8g02529 Armi-Chr8:93878719 dispersed
Armi Armi-Chr3:6144262 Armi3g04266 Armi-Chr3:155213254 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Armi1g00406 ACH 1 263 14-3-3 family AT2G42590 77.186 3.01e-151 420.0
Armi2g02389 ACH 4 247 14-3-3 family AT5G65430 85.656 2.29e-159 440.0
Armi3g00280 . 6 265 14-3-3 family AT1G26480 83.077 7.29e-162 447.0
Armi3g04266 . 6 256 14-3-3 family AT1G26480 86.111 6.12e-163 450.0
Armi4g02155 . 2 256 14-3-3 family AT1G78300 86.719 1.82e-163 451.0
Armi5g01294 . 6 263 14-3-3 family AT2G42590 77.22 1.85e-147 411.0
Armi8g02529 ACH 1 263 14-3-3 family AT2G42590 77.186 1.70e-151 421.0
Armi12g01224 . 3 259 14-3-3 family AT1G78300 88.716 7.14e-169 465.0
Armi12g01694 ACH 4 247 14-3-3 family AT5G10450 86.066 1.19e-158 438.0
Armi13g00907 . 3 254 14-3-3 family AT3G02520 90.079 3.90e-169 466.0
Armi13g01425 . 2 256 14-3-3 family AT1G78300 87.109 1.09e-163 452.0
Armi14g00110 . 2 249 14-3-3 family AT1G34760 75.299 1.80e-138 388.0
Armi14g00136 . 7 266 14-3-3 family AT1G35160 86.207 1.99e-168 464.0