Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Armi3g04254	ATGGATTTTTCTCCGGCGGCTCGCCGGACGAGCAAAAAGCCGACAAAATCAGAGCTCTACTCAACGTTTGTAGTTCATAGCGACGATGAAGATGACGAAGCACAAAAGCAAAAAAACCCTAAAAAGGCAGATTCAGGGGACATATACGCTACTATGCTATGTAAAGAAGATGACGATCCGAATGATGACGAATCACTACCTCCTCTCCTCAAGCGACTGCCAAAAGACTTCGGAGCCGCTGTTGATTCCGACGACGATGGAGAAAGCATCTCCGGCACAATGATTGTGAAAACTGGCCGTAGTCGCGTGCAAGCTACGTATAGGAGAGAGGAATCCGATGAAGAAGAAGACGACGACGAAGATGGCGGCGGATTTGGGACGTTTGTGGTGAGATCGGAGGACAGAGAGAATGAATCAATATCTGGAACAGTGGTGCGGCGGACTAGTGACGGAATGTCAACGATGAGTAGGGCGGTGGCTAGTATGAATGCGGTAGGTGAAGGATTTGGGAAGCCAAGGAAGGGGAGTGGTACGCCGACGTCATCTTCACAGGATGAAGAAGGAGGATACTCACGGCGACAGACAAGCAAAATGTCTTCCGGTTCGATTGCAGATAGTATTACGAGAGAAGATCCATCTACCAAGTACGAATTGCTTCATGAACTTGGAAAAGGTTCTTATGGGTCTGTTTACAAAGCTCGCGATTTAAAAACTTCCGAAATGGTTGCAATCAAAGTGATATCATTATCTGAAGGGGAAGAAGGGTATGAAGAAATTCGTGGTGAAATAGAGATGTTGCAGCAATGCAGTAATCCTAATGTTGTTCGATACCTAGGAAGTTACCAGGGTGAGGAATACCTTTGGATTGTAATGGAGTACTGTGGTGGAGGAAGTGTTGCTGATTTGATGAATGTTACCGATGAGCCTTTAGAGGAGTACCAAATAGCATATATATGTAGGGAAGCATTAAAGGGTTTATCCTATTTGCACTCAATCTTCAAAGTGCATCGCGATATTAAGGGTGGTAATATTTTGTTGACTGAACAAGGAGAGGTCAAGTTGGGTGATTTTGGTGTTGCTGCACAGCTGACAAGGACAATGTCCAAACGTAATACGTTTATTGGTACTCCCCACTGGATGGCTCCTGAGGTTATCCAGGAGAGTCGATATGATGGGAAGGTAGATGTGTGGGCCCTTGGGGTGTCTGCAATCGAAATGGCTGAGGGGCTTCCTCCAAGATCAAATGTGCACCCAATGAGGGTGTTATTTATGATATCCAGCGAACCCGCTCCAATGCTTGAAGATAAGGAGAAATGGTCTCTTGTGTTCCATGATTTCATTGCAAAATGCCTTACAAAAGACCCTCGTATTCGTCCCACTGCATCTGAGCTGCTAAAGCATAAATTTATGGAAAAATGCAAAATTGGAGCTTCTGCAATGTTACCGAAGCTTGAGAGGGCAAAGCAAAATAGGGCGTCAATGGCATTGGAAGCAGAAAATGTTCCTGCGGAGACCGTACCCGGATACGGGACACTGGGAGCAAAAATGAATGAAGACTTTGGAGATACTGTTCCATCCAAGCCTCATCAAGTGCCTAATGGAGTACCTGTTGTAGGTGGTTCAGTACAAGCTGATGGTTTGGAAGACTCTGGAGAAGGTGATTTCGGAAGTGTCATAATTCATGGTGGAGTAGGTATAGATAAGACAACTGCTAAAACACCTGTTCCAACAGCAAAGGAGCCCTCACCCTCTTCAGCACATGGCCGAATTTCGTCAATTGCTGATCCTGGAGAAAATTCAGTTAGCCCATGGCTGACCAACAAAGTTGGTGCATCCACAGATACATTTCGTATTGTTGAATCACCAGCTACCGAACACACAACACGAGCTATTGGAAGCGGTGGTGCTGCCATCAGTGGCACAACTAAGAAAGACACTGTTAATCGCAAAGCACTAGACAAGCTGTGGTCTATATATGCCGCTGGAAACACAGTGCCAATTCCATTTTTGAGGGCAACTGATATATCTCCCATTGCATTATTGTCCGAGAATGTGCTTGGAAGTCAGCATGTGGATAATGTTGGAAGTGTAGCTGTAGAAGCATTGCAAGACCTTTTCACGAGCGATGGACAGTCTAAGAAGGGCCGAAGGCAAAATGAGCTGCCTCTTCCTCCAAGTGTATACCAGAGACTCACATCAAGCCCAACATTGATGAATCTTGCACAGGCTTTGTCATATCATAAAATGTGTTATGAAGAGATGCCACTGCAGGAACTACAAGCAGCTCAAGAACAACAAACCATTCAGAACCTTTGTGATACCCTTCGAACTATTTTACGGCTATAA	2346	45.23	MDFSPAARRTSKKPTKSELYSTFVVHSDDEDDEAQKQKNPKKADSGDIYATMLCKEDDDPNDDESLPPLLKRLPKDFGAAVDSDDDGESISGTMIVKTGRSRVQATYRREESDEEEDDDEDGGGFGTFVVRSEDRENESISGTVVRRTSDGMSTMSRAVASMNAVGEGFGKPRKGSGTPTSSSQDEEGGYSRRQTSKMSSGSIADSITREDPSTKYELLHELGKGSYGSVYKARDLKTSEMVAIKVISLSEGEEGYEEIRGEIEMLQQCSNPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNVTDEPLEEYQIAYICREALKGLSYLHSIFKVHRDIKGGNILLTEQGEVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGLPPRSNVHPMRVLFMISSEPAPMLEDKEKWSLVFHDFIAKCLTKDPRIRPTASELLKHKFMEKCKIGASAMLPKLERAKQNRASMALEAENVPAETVPGYGTLGAKMNEDFGDTVPSKPHQVPNGVPVVGGSVQADGLEDSGEGDFGSVIIHGGVGIDKTTAKTPVPTAKEPSPSSAHGRISSIADPGENSVSPWLTNKVGASTDTFRIVESPATEHTTRAIGSGGAAISGTTKKDTVNRKALDKLWSIYAAGNTVPIPFLRATDISPIALLSENVLGSQHVDNVGSVAVEALQDLFTSDGQSKKGRRQNELPLPPSVYQRLTSSPTLMNLAQALSYHKMCYEEMPLQELQAAQEQQTIQNLCDTLRTILRL	781

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Armi3g04254	781	CDD	STKc-MAP4K3-like	215	469	-	-
	Armi3g04254	781	SMART	serkin-6	216	470	IPR000719	GO:0004672(InterPro)\|GO:0005524(InterPro)\|GO:0006468(InterPro)
	Armi3g04254	781	PANTHER	SERINE-THREONINE-PROTEIN KINASE TAO	168	500	IPR050285	GO:0006468(PANTHER)\|GO:0035556(PANTHER)\|GO:0043408(PANTHER)
	Armi3g04254	781	ProSitePatterns	Protein kinases ATP-binding region signature.	222	245	IPR017441	GO:0005524(InterPro)
	Armi3g04254	781	Gene3D	Transferase(Phosphotransferase) domain 1	212	506	-	-
	Armi3g04254	781	MobiDBLite	consensus disorder prediction	575	601	-	-
	Armi3g04254	781	MobiDBLite	consensus disorder prediction	1	211	-	-
	Armi3g04254	781	SUPERFAMILY	Protein kinase-like (PK-like)	215	471	IPR011009	-
	Armi3g04254	781	MobiDBLite	consensus disorder prediction	1	15	-	-
	Armi3g04254	781	FunFam	Aurora kinase A	208	297	-	-
	Armi3g04254	781	ProSiteProfiles	Protein kinase domain profile.	216	470	IPR000719	GO:0004672(InterPro)\|GO:0005524(InterPro)\|GO:0006468(InterPro)
	Armi3g04254	781	MobiDBLite	consensus disorder prediction	175	209	-	-
	Armi3g04254	781	FunFam	serine-threonine-protein kinase dst1 isoform X1	213	504	-	-
	Armi3g04254	781	MobiDBLite	consensus disorder prediction	23	43	-	-
	Armi3g04254	781	MobiDBLite	consensus disorder prediction	142	160	-	-
	Armi3g04254	781	Pfam	Protein kinase domain	216	470	IPR000719	GO:0004672(InterPro)\|GO:0005524(InterPro)\|GO:0006468(InterPro)
	Armi3g04254	781	MobiDBLite	consensus disorder prediction	573	601	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Armi3g04254	-	-

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	384213	Armi	Armi3g04254	Armi-Chr3:154874082	Armi5g00393	Armi-Chr5:7857825
	405896	Armi	Armi3g04254	Armi-Chr3:154874082	Armi7g00228	Armi-Chr7:3995323

Gene Family Members

Select	Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
	Armi3g04254	.	5	836	MAP Kinase Kinase Kinase Kinase Protein gene family	AT1G69220	61.294	0.0	912.0
	Armi4g03069	ACH	6	669	MAP Kinase Kinase Kinase Kinase Protein gene family	AT5G14720	62.427	0.0	857.0
	Armi5g00393	.	40	709	MAP Kinase Kinase Kinase Kinase Protein gene family	AT4G10730	66.102	0.0	931.0
	Armi6g02401	.	6	476	MAP Kinase Kinase Kinase Kinase Protein gene family	AT4G14480	52.191	9.10e-166	477.0
	Armi7g00228	.	1	690	MAP Kinase Kinase Kinase Kinase Protein gene family	AT3G15220	63.225	0.0	850.0
	Armi12g00256	.	4	683	MAP Kinase Kinase Kinase Kinase Protein gene family	AT1G79640	58.646	0.0	758.0
	Armi13g00117	ACH	6	673	MAP Kinase Kinase Kinase Kinase Protein gene family	AT5G14720	62.774	0.0	855.0
	Armi14g01424	.	4	683	MAP Kinase Kinase Kinase Kinase Protein gene family	AT1G79640	60.229	0.0	799.0
	Armi18g00124	ACH	8	672	MAP Kinase Kinase Kinase Kinase Protein gene family	AT5G14720	63.319	0.0	873.0

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	Armi	Pkinase	7.4e-69	CL0016		PK	STE_STE20-Pl