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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Artr1g07686 ATGGCACTTTTGGAGTTAAAAAAGGACAGAGGTGAGGTGAGGATTCATGAGAGTTTGGAAGAACTTAGCACCGATTTAGCGGATTATATAGCGGAATTATCTGAAGCATCGGTTAAAGAACGAGGTTTTTTCGCCATTGCTTTATCGGGTGGTTCACTTATTAGCTTGATGAGGAATTTGTGTGGAGCGCCTTATAACAAGACTGTAGATTGGTCTAAATGGTATATATTTTGGGCGGATGAACGTGTTGTTGCGAAGAATCATGTTGATAGTAACTATAAGCTTGCTAAAGATCATCTGTTGTCCAAGTTTCCTATTGTTCCAAGCCATGTGCATTCCATCAATGATTCAATCACAGCAGAAGAAGCTGCAAATGAGTACGAGTTTGTGATCAGACAGTTAGTCAGAACCCGTGTGGTTAATGTTTCTGATGTCAGCGACTGCCCGAAATTTGATCTAATCCTACTAGGGATGGGGCCAGATGGTCACGTGGCATCTTTGTTCCCTAACCATTCGGTTCTTGAAGAAAAGAATGAATGGGTGACATTCATCACCACATCCCCTAAACCACCACCCGAAAGAATCACATTCACATTGCCTGTTATCAACTCTGCAGCCAATGTGGCAGTGGTCGTGACAGGTATAGAAAAAGCGGAAGCTGCCCGTCTGGTGATAGATGACGTGGGACCTGAGTGCCCGGTTTTGCCAGCTAGGATGATTGAGCCAGCTGTAGGGAAACTGGTGTGGTTTTTGGATAACCAAGCTGGTTCAAAGCTCAAGTGCTTTTCTCAATTTTCTAAGTAG 804 43.66 MALLELKKDRGEVRIHESLEELSTDLADYIAELSEASVKERGFFAIALSGGSLISLMRNLCGAPYNKTVDWSKWYIFWADERVVAKNHVDSNYKLAKDHLLSKFPIVPSHVHSINDSITAEEAANEYEFVIRQLVRTRVVNVSDVSDCPKFDLILLGMGPDGHVASLFPNHSVLEEKNEWVTFITTSPKPPPERITFTLPVINSAANVAVVVTGIEKAEAARLVIDDVGPECPVLPARMIEPAVGKLVWFLDNQAGSKLKCFSQFSK* 268
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Artr1g07686 267 CDD 6PGL 20 251 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Artr1g07686 267 Gene3D - 9 262 - -
Artr1g07686 267 NCBIfam 6-phosphogluconolactonase 15 259 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Artr1g07686 267 FunFam Probable 6-phosphogluconolactonase 8 260 - -
Artr1g07686 267 Pfam Glucosamine-6-phosphate isomerases-6-phosphogluconolactonase 19 249 IPR006148 GO:0005975(InterPro)
Artr1g07686 267 PANTHER 6-PHOSPHOGLUCONOLACTONASE 7 260 IPR039104 -
Artr1g07686 267 SUPERFAMILY NagB-RpiA-CoA transferase-like 13 261 IPR037171 -
Artr1g07686 267 Coils Coil 19 39 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Artr1g07686 K01057 6-phosphogluconolactonase [EC:3.1.1.31]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
475501 Artr Artr1g07686 Artr-Chr1:224577116 Artr4g01929 Artr-Chr4:60203356
583747 Artr Artr1g07686 Artr-Chr1:224577116 Artr7g11147 Artr-Chr7:375911925