AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Artr3g10700 | ATGGCCTTCATTTCTAAAGTTCACAACTTATCCGGCGACTTTCAAACTTCCACAACCACCCTACCAATGTGGTATGATGAAACTACTTCACCAAGTGTCTTTGACAACTATGGGATCACAATGCCACTCGAATATGACATCACTTCGTGGAAGACTTCATTAATCCCTGAGAGATTTGGGGTTTCAGAGATGGTGGTTCCAACTTCACCCGCTGGATTCAGTAGCATTCTTGTTGGAAATGATTATCAAAAGGTTGAAAATGACGAATATTTTTGTAGTAAGGGTGCCTACGGCGCAAACTCATGGTCGTCTTATCAAACTACAACTAATAATTGGGAAACTGAGAACCAGAAAAGTAGTAAAGAAATCGAAGAACCAACATTAAAGATTGGGAGGTATTCAGCGGAAGAAAGGAAAGACAAGATCATGAGGTATCTAAAGAAGAGAAACCAAAGGAACTTCAATAAGACCATTAAGTATGAATGCCGAAAGACATTAGCAGACAAGCGAATACGAGTTCGAGGGAGGTTTGCGAAGAACAATAATGATAATCATCATCATCATGACCATCACGATCATCAACCTTGTGAAGATCAAGTGCTGCCTAACTTCAATATTGCCGATAATCCTTTCGAGGAAGACATTCAACAGTTATACACCAACAATTTTCTGATGAAGCAGGATTATGATGAAGAAGAAGAATGGCTGCAAGAAGCGATGGCTAGTTTATTGTATTCACCACAGATTAACTAG | 753 | 39.44 | MAFISKVHNLSGDFQTSTTTLPMWYDETTSPSVFDNYGITMPLEYDITSWKTSLIPERFGVSEMVVPTSPAGFSSILVGNDYQKVENDEYFCSKGAYGANSWSSYQTTTNNWETENQKSSKEIEEPTLKIGRYSAEERKDKIMRYLKKRNQRNFNKTIKYECRKTLADKRIRVRGRFAKNNNDNHHHHDHHDHQPCEDQVLPNFNIADNPFEEDIQQLYTNNFLMKQDYDEEEEWLQEAMASLLYSPQIN* | 251 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Artr3g10700 | 250 | PANTHER | ZINC FINGER PROTEIN CONSTANS-LIKE 4 | 103 | 240 | IPR045281 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(PANTHER)|GO:0009909(InterPro) | |
| Artr3g10700 | 250 | ProSiteProfiles | CCT domain profile. | 138 | 180 | IPR010402 | GO:0005515(InterPro) | |
| Artr3g10700 | 250 | Pfam | CCT motif | 138 | 180 | IPR010402 | GO:0005515(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Artr3g10700 | K03539 | ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Artr | Artr-Chr3:361164758 | Artr4g07884 | Artr-Chr4:269660528 | dispersed | |
| Artr | Artr-Chr3:51856642 | Artr3g10700 | Artr-Chr3:361164758 | transposed | |
| Artr | Artr-Chr1:392009536 | Artr3g10700 | Artr-Chr3:361164758 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Artr1g01483 | . | 1 | 105 | C2C2-CO-like Transcription Factor family | AT4G27310 | 52.381 | 1.73e-30 | 109.0 | |
| Artr1g01826 | ACH | 1 | 299 | C2C2-CO-like Transcription Factor family | AT1G78600 | 51.125 | 2.70e-94 | 279.0 | |
| Artr1g01926 | ACH | 1 | 373 | C2C2-CO-like Transcription Factor family | AT5G48250 | 53.708 | 4.65e-134 | 386.0 | |
| Artr1g04858 | . | 284 | 331 | C2C2-CO-like Transcription Factor family | AT5G57660 | 52.083 | 1.08e-09 | 56.6 | |
| Artr1g05583 | . | 1 | 183 | C2C2-CO-like Transcription Factor family | AT4G38960 | 60.094 | 2.97e-84 | 246.0 | |
| Artr1g05797 | ACH | 4 | 105 | C2C2-CO-like Transcription Factor family | AT5G54470 | 52.427 | 3.87e-30 | 108.0 | |
| Artr1g12088 | . | 78 | 319 | C2C2-CO-like Transcription Factor family | AT3G02380 | 29.236 | 5.63e-23 | 95.9 | |
| Artr1g12103 | . | 73 | 319 | C2C2-CO-like Transcription Factor family | AT3G02380 | 30.619 | 3.14e-23 | 96.7 | |
| Artr2g02760 | . | 7 | 77 | C2C2-CO-like Transcription Factor family | AT5G57660 | 64.789 | 2.88e-29 | 107.0 | |
| Artr2g04621 | . | 1 | 299 | C2C2-CO-like Transcription Factor family | AT1G78600 | 49.839 | 2.15e-91 | 271.0 | |
| Artr2g04871 | . | 1 | 367 | C2C2-CO-like Transcription Factor family | AT3G07650 | 54.987 | 4.11e-132 | 380.0 | |
| Artr3g06788 | . | 9 | 355 | C2C2-CO-like Transcription Factor family | AT5G57660 | 42.577 | 1.16e-73 | 230.0 | |
| Artr3g10700 | . | 252 | 330 | C2C2-CO-like Transcription Factor family | AT5G15850 | 35.443 | 4.33e-10 | 57.4 | |
| Artr3g11566 | ACH | 176 | 298 | C2C2-CO-like Transcription Factor family | AT1G78600 | 41.538 | 1.03e-17 | 75.5 | |
| Artr3g11817 | ACH | 1 | 373 | C2C2-CO-like Transcription Factor family | AT5G48250 | 53.398 | 6.00e-129 | 374.0 | |
| Artr4g04157 | . | 202 | 270 | C2C2-CO-like Transcription Factor family | AT2G24790 | 42.029 | 8.91e-11 | 58.5 | |
| Artr4g07884 | ACH | 338 | 383 | C2C2-CO-like Transcription Factor family | AT5G24930 | 56.522 | 3.28e-11 | 62.0 | |
| Artr4g12854 | . | 331 | 393 | C2C2-CO-like Transcription Factor family | AT5G24930 | 46.032 | 3.69e-12 | 65.5 | |
| Artr5g00840 | . | 3 | 272 | C2C2-CO-like Transcription Factor family | AT2G24790 | 46.926 | 1.72e-80 | 244.0 | |
| Artr5g03290 | ACH | 235 | 333 | C2C2-CO-like Transcription Factor family | AT5G15850 | 37.0 | 1.89e-12 | 65.5 | |
| Artr6g02856 | . | 1 | 202 | C2C2-CO-like Transcription Factor family | AT1G75540 | 50.718 | 1.73e-60 | 191.0 | |
| Artr6g05504 | . | 1 | 347 | C2C2-CO-like Transcription Factor family | AT3G02380 | 52.196 | 6.01e-117 | 342.0 | |
| Artr7g02881 | . | 270 | 386 | C2C2-CO-like Transcription Factor family | AT5G24930 | 35.246 | 6.17e-12 | 64.7 | |
| Artr7g08124 | . | 9 | 347 | C2C2-CO-like Transcription Factor family | AT3G02380 | 49.33 | 2.74e-116 | 340.0 | |
| Artr7g11442 | . | 284 | 331 | C2C2-CO-like Transcription Factor family | AT5G57660 | 52.083 | 2.85e-10 | 58.2 | |
| Artr8g09964 | . | 5 | 221 | C2C2-CO-like Transcription Factor family | AT3G21150 | 29.185 | 4.30e-18 | 78.2 | |
| Artr9g04555 | . | 287 | 399 | C2C2-CO-like Transcription Factor family | AT1G68520 | 41.481 | 6.89e-21 | 91.3 | |
| Artr9g04872 | . | 8 | 401 | C2C2-CO-like Transcription Factor family | AT2G33500 | 38.479 | 2.61e-73 | 234.0 | |
| Artr9g06433 | ACH | 4 | 97 | C2C2-CO-like Transcription Factor family | AT5G54470 | 55.789 | 7.21e-32 | 113.0 | |
| Artr9g06452 | ACH | 4 | 97 | C2C2-CO-like Transcription Factor family | AT5G54470 | 54.737 | 2.08e-31 | 112.0 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Artr | CCT | 4.8e-18 | CL0281 | TR | Others |