AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Artr3g10774 ATGGCGGAACATTTTGCTGGTGATGCTACTGATCAAATAGGTCATCCGTCTCCTTGTAATGTTAATGCACGCGATTCTTCTTCATGGAGACTCGATATCAACCTCTTTCGATTACCAGAATCTGCCTTTCTTCCGACCCCAAAGAAACGAGGAAAAGTGAAAGCATACTACAAGAAACAAGAATTGCTATTTGAAGGGTTCAATGAGATGGAAACAATAAGCAAATCAGGCTTTGCACCTGGAGGCCTGACAGAGGATGAAATGAAGAATCTTGCTAAAAGTGAAAGAATGGCTATCTATGTGTCGAACGTAGCTAACTTGGTTCTTTTCATTGCTAAAGTCTATGCATCATACGAGAGTAAATCATTAGCAGTTATTGCATCAACTTTGGATTCATTTTTAGACTTGTTGTCCGGATTTATTTTATGGTTCACTTCAAATGCCATGAGAAATCCTAATCAGTATCACTATCCAATTGGGAAGAACCGGATGCAACCTGTTGGGATTGTTGTTTTTGCGTCAGTAATGGCAACTCTTGGTTTCCAAATATTGCTCGAGTCTGCTAGAGAACTCATTGCCGGGACACACCCTAACAAGAGTCATTATGATGAAATGTGGGTGATTGGTATCATGGTGTCCGTGACTGCAGTGAAATTTGTCCTCATGGTTTATTGTCGAAAATTTGAAAATGAAATAGTAAGAGCCTACGCGCAAGATCATTTGTTCGACGTCATCACAAACTCAGTTGGATTAGCAGCAACAGTCTTAGCCATACGTTACAAATGGTGGATTGATCCCGTTGGAGCTATACTTATAGCGCTCTATACGATAAATACATGGTCAAAGACCGTTCTAGAGAATGTATGGTCGTTAATTGGGAGGACGGCTCCACCAGAATTCTTAGCGAAATTGACATATTTGGTTTGGAACCATCATGAACAAATAAAACACATTGATACAGTTAGAGCATACACATTCGGGGGTCAATACTTTGTTGAGGTAGATATAGTGTTGCCCAAGGAAATGATGCTTGGTGAGGCACACAATATCGGGGAAATGTTGCAAGAGAAACTAGAGCAGTTGCCGGAAGTTGAACGAGCTTTTGTTCATATTGATTTTGAGTTCACTCATGCACCCGAACATAAGGGAAAAGTTTGA 1158 40.41 MAEHFAGDATDQIGHPSPCNVNARDSSSWRLDINLFRLPESAFLPTPKKRGKVKAYYKKQELLFEGFNEMETISKSGFAPGGLTEDEMKNLAKSERMAIYVSNVANLVLFIAKVYASYESKSLAVIASTLDSFLDLLSGFILWFTSNAMRNPNQYHYPIGKNRMQPVGIVVFASVMATLGFQILLESARELIAGTHPNKSHYDEMWVIGIMVSVTAVKFVLMVYCRKFENEIVRAYAQDHLFDVITNSVGLAATVLAIRYKWWIDPVGAILIALYTINTWSKTVLENVWSLIGRTAPPEFLAKLTYLVWNHHEQIKHIDTVRAYTFGGQYFVEVDIVLPKEMMLGEAHNIGEMLQEKLEQLPEVERAFVHIDFEFTHAPEHKGKV* 386
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Artr3g10774 385 Pfam Cation efflux family 100 291 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Artr3g10774 385 PANTHER MITOCHONDRIAL METAL TRANSPORTER 1-RELATED 48 382 IPR050291 GO:0008324(PANTHER)|GO:0016020(PANTHER)
Artr3g10774 385 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 296 372 IPR036837 -
Artr3g10774 385 NCBIfam cation diffusion facilitator family transporter 98 372 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Artr3g10774 385 Pfam Dimerisation domain of Zinc Transporter 297 372 IPR027470 -
Artr3g10774 385 SUPERFAMILY Cation efflux protein transmembrane domain-like 94 293 IPR027469 -
Artr3g10774 385 Gene3D Cation efflux protein transmembrane domain 96 291 IPR027469 -
Artr3g10774 385 FunFam Metal tolerance protein 11 294 374 - -
Artr3g10774 385 FunFam Metal tolerance protein 11 98 291 - -
Artr3g10774 385 Gene3D Cation efflux protein, cytoplasmic domain 295 373 IPR036837 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Artr3g10774 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Artr Artr-Chr1:16796261 Artr3g10774 Artr-Chr3:363333130 dispersed
Artr Artr-Chr3:363333130 Artr7g04032 Artr-Chr7:155791415 dispersed
Artr Artr-Chr3:363333130 Artr6g08625 Artr-Chr6:295607651 transposed