AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Artr3g11059 ATGGGCTCGGAACAACATTTTGGTTATAGAGTAACTAGTCAACCCTCATCTTACTCAGCTCCCAAACCACAAATCCCTTTATTTCCCACAAGGAGAATCGGATCCTTAAAGTTTGAATCAAGAGACTCACCCAACTCTCCCTTCGTAAACCCGTTTGATTCAGAGATATTCACCACTAGCGATAGTCGAGAAAAATACAGCTCAACCTCAGGTGCTAGCCCTTCTTCCCTCGAAGATTGTAGCTCTGTTAACCCTTCAAGCAGTGCTCATTACATGATCAATGCTCTTCAAGATATAGAGACCACTCTAATGGCCCCAGATGATGACGTATCCATGCCCATTAACCCTTCTTATGGTCAAAACCAGTGGCCACAACCGTCAAACCAAAGGCCTACACAGTGGACCCATGAACCCACCAGTTCAAACATGGTTCAGCCCCAAGTTCTACATGCTAATAGTAATCTAAAACAGTTGCTTATTGCGTGTGCAAGTGCACTTGCTGGAAACAAGCTTGATGAGTTTAAGGTCCTGGTTGAACATGCACGAGCTTTGGTGTCGATTAGTGGCGACCCAATACAGAGGCTAGGTGCTTATATGGTCGAAGGTTTGGTAGCTAGGCGGGAATTGTCTGGGACTCACATATATCGAGCCTTAAGGTGTCGGGAACCCGAAGGTAAAGACTTACTTTCCTACATGCAAATCTTATACGATATATGCCCGTATTGGAAGTTCGGGTACATGGCTGCAAACGGTGCAATAGCAGAAGCTTGCAGAAATGAAGATCGAATCCACATCATCGACTTCCAAATAGCTCAAGGGACACAATGGATGACACTTCTGCAGGCTCTTGCTGCTAGACCTGGGGGCCCACCTTACGTCCGTATTACGGGAATTGACGATCCAGTTTCGAAATATGCACGTGGCGATAGTTTGGAGTTGGTTGGAAAACGATTAGAAATGGTTTCTAAAAAGTTTAATATCCCGATTGAGTTTCACCCGCTTCCGGTTTACGCACCACACGTGACAAAATTGATGCTTGATGTAAGACCAGGTGAGACCTTAGCGGTGAATTTCCCGCTTCAACTTCATCACATGCCGGACGAAAGTGTTGATGTGAATAACCCTCGCGATGAACGGTTACGAATGGTCAAATCACTTTCACCGAAAGTTGTTACATTAATCGAGCAAGAATCGAACACAAACACAGCTGCTTTCTTTCCCAGGTTCATGGAAGCCCTTGACTATTACTCTGCAATGTTCGAGTCAATGGATGCAACTTCAACACGGGATAAAAAAGAACGAATAAATGTGGAACAGCATTGCTTGGCTCGAGACATAGTCAACATCATAGCATGTGAAGGTAAAGAAAGAGTTGAAAGACATGAGCTTTTCAAGAAGTGGAGGTCAAGGTTAACTATGGCGGGGTTTAAACAGTATCCGTTAAGTGGGTATGTAAATTCGGTTATCAGGGATTTGCTAAAGTGCTATTCGAAGCATTATACATTGGTGGAAGAAGATGGAGCTATGCTGTTGGGTTGGAAAGAAAGAAATCTTATATCCGCATCTGCTTGGCATTGA 1578 44.17 MGSEQHFGYRVTSQPSSYSAPKPQIPLFPTRRIGSLKFESRDSPNSPFVNPFDSEIFTTSDSREKYSSTSGASPSSLEDCSSVNPSSSAHYMINALQDIETTLMAPDDDVSMPINPSYGQNQWPQPSNQRPTQWTHEPTSSNMVQPQVLHANSNLKQLLIACASALAGNKLDEFKVLVEHARALVSISGDPIQRLGAYMVEGLVARRELSGTHIYRALRCREPEGKDLLSYMQILYDICPYWKFGYMAANGAIAEACRNEDRIHIIDFQIAQGTQWMTLLQALAARPGGPPYVRITGIDDPVSKYARGDSLELVGKRLEMVSKKFNIPIEFHPLPVYAPHVTKLMLDVRPGETLAVNFPLQLHHMPDESVDVNNPRDERLRMVKSLSPKVVTLIEQESNTNTAAFFPRFMEALDYYSAMFESMDATSTRDKKERINVEQHCLARDIVNIIACEGKERVERHELFKKWRSRLTMAGFKQYPLSGYVNSVIRDLLKCYSKHYTLVEEDGAMLLGWKERNLISASAWH* 526
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Artr3g11059 525 MobiDBLite consensus disorder prediction 1 84 - -
Artr3g11059 525 Pfam GRAS domain family 155 524 IPR005202 -
Artr3g11059 525 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 133 524 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Artr3g11059 525 MobiDBLite consensus disorder prediction 114 140 - -
Artr3g11059 525 MobiDBLite consensus disorder prediction 1 23 - -
Artr3g11059 525 ProSiteProfiles GRAS family profile. 146 525 IPR005202 -
Artr3g11059 525 MobiDBLite consensus disorder prediction 39 84 - -
Artr3g11059 525 MobiDBLite consensus disorder prediction 106 140 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Artr3g11059 K27748 scarecrow-like transcription factor PAT
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
506519 Artr Artr3g10260 Artr-Chr3:344071605 Artr3g11059 Artr-Chr3:372368017
507251 Artr Artr3g11059 Artr-Chr3:372368017 Artr3g11955 Artr-Chr3:409778280
600597 Artr Artr3g11059 Artr-Chr3:372368017 Artr3g10256 Artr-Chr3:343928879
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Artr1g00739 . 40 444 GRAS Transcription Factor family AT1G55580 48.649 9.66e-124 363.0
Artr1g01761 . 73 716 GRAS Transcription Factor family AT2G37650 51.735 0.0 644.0
Artr1g04742 . 31 640 GRAS Transcription Factor family AT5G52510 41.956 1.27e-129 392.0
Artr1g07822 . 44 582 GRAS Transcription Factor family AT2G01570 61.455 0.0 649.0
Artr1g09978 . 20 400 GRAS Transcription Factor family AT5G41920 55.325 7.13e-141 417.0
Artr1g13043 . 161 529 GRAS Transcription Factor family AT1G14920 35.949 9.28e-76 247.0
Artr1g13381 . 43 490 GRAS Transcription Factor family AT5G48150 67.184 0.0 612.0
Artr1g14285 . 23 444 GRAS Transcription Factor family AT1G55580 46.759 3.71e-120 355.0
Artr2g01931 . 27 529 GRAS Transcription Factor family AT1G14920 48.35 1.56e-159 464.0
Artr2g03590 . 1 510 GRAS Transcription Factor family AT3G13840 46.792 9.19e-143 420.0
Artr2g05137 . 150 507 GRAS Transcription Factor family AT1G66350 30.769 2.08e-56 195.0
Artr2g10306 . 276 650 GRAS Transcription Factor family AT3G54220 54.497 1.37e-143 425.0
Artr3g05007 . 73 714 GRAS Transcription Factor family AT2G37650 52.765 0.0 652.0
Artr3g06089 ACH 2 767 GRAS Transcription Factor family AT1G07530 44.645 0.0 568.0
Artr3g06090 ACH 2 767 GRAS Transcription Factor family AT1G07530 44.516 0.0 597.0
Artr3g10256 . 140 596 GRAS Transcription Factor family AT1G50600 62.203 0.0 580.0
Artr3g10260 . 155 597 GRAS Transcription Factor family AT1G50600 60.356 0.0 550.0
Artr3g10755 . 147 506 GRAS Transcription Factor family AT1G66350 36.951 1.11e-67 224.0
Artr3g11059 . 73 489 GRAS Transcription Factor family AT5G48150 57.737 6.00e-174 498.0
Artr3g11541 . 43 188 GRAS Transcription Factor family AT3G54220 42.373 2.92e-28 111.0
Artr3g11542 . 248 651 GRAS Transcription Factor family AT3G54220 81.663 0.0 658.0
Artr3g11955 . 34 490 GRAS Transcription Factor family AT5G48150 59.091 0.0 531.0
Artr4g01636 . 11 405 GRAS Transcription Factor family AT5G41920 63.57 2.01e-178 503.0
Artr4g02083 . 41 582 GRAS Transcription Factor family AT2G01570 59.552 0.0 652.0
Artr4g04326 ACH 86 766 GRAS Transcription Factor family AT1G07530 49.133 0.0 605.0
Artr4g04334 ACH 317 767 GRAS Transcription Factor family AT1G07530 50.998 8.60e-164 484.0
Artr4g06178 . 18 592 GRAS Transcription Factor family AT1G21450 54.778 0.0 603.0
Artr4g07717 . 30 656 GRAS Transcription Factor family AT1G63100 51.491 0.0 549.0
Artr4g08261 . 92 555 GRAS Transcription Factor family AT4G00150 39.923 3.57e-105 327.0
Artr4g08556 . 30 192 GRAS Transcription Factor family AT5G41920 26.506 1.87e-08 53.1
Artr4g08557 . 170 547 GRAS Transcription Factor family AT3G03450 28.205 8.46e-50 177.0
Artr4g08558 . 170 547 GRAS Transcription Factor family AT3G03450 29.897 8.13e-56 194.0
Artr4g08560 . 259 547 GRAS Transcription Factor family AT3G03450 31.615 7.79e-50 174.0
Artr5g04318 . 141 530 GRAS Transcription Factor family AT4G37650 53.75 6.21e-142 414.0
Artr5g05374 . 204 555 GRAS Transcription Factor family AT4G00150 57.923 2.83e-142 423.0
Artr5g07281 . 1 479 GRAS Transcription Factor family AT1G50420 62.839 0.0 600.0
Artr6g00018 . 222 323 GRAS Transcription Factor family AT5G59450 25.243 3.49e-06 43.5
Artr6g00233 . 9 510 GRAS Transcription Factor family AT3G13840 45.18 1.21e-152 446.0
Artr6g01599 . 37 484 GRAS Transcription Factor family AT4G36710 49.024 1.09e-131 389.0
Artr6g03790 . 165 529 GRAS Transcription Factor family AT1G14920 34.884 3.38e-70 233.0
Artr6g05593 . 24 478 GRAS Transcription Factor family AT1G50420 37.118 2.52e-102 310.0
Artr6g06771 . 141 507 GRAS Transcription Factor family AT1G66350 44.909 7.54e-99 311.0
Artr6g07695 . 115 518 GRAS Transcription Factor family AT5G17490 33.796 4.85e-58 198.0
Artr7g02297 . 4 482 GRAS Transcription Factor family AT1G50420 65.145 0.0 621.0
Artr7g08829 . 37 486 GRAS Transcription Factor family AT4G36710 47.335 5.78e-133 393.0
Artr7g09741 . 86 767 GRAS Transcription Factor family AT1G07530 45.007 0.0 555.0
Artr7g11230 . 185 640 GRAS Transcription Factor family AT5G52510 46.331 6.12e-117 358.0
Artr8g00964 . 152 516 GRAS Transcription Factor family AT5G17490 25.907 1.03e-20 93.2
Artr8g00967 . 135 515 GRAS Transcription Factor family AT5G17490 24.19 3.23e-17 82.4
Artr8g00968 . 258 544 GRAS Transcription Factor family AT3G03450 27.09 2.34e-17 82.8
Artr8g06455 . 363 480 GRAS Transcription Factor family AT1G50420 31.818 2.09e-18 78.2
Artr8g06457 . 53 413 GRAS Transcription Factor family AT2G04890 32.208 4.60e-54 184.0
Artr8g06459 . 53 413 GRAS Transcription Factor family AT2G04890 32.208 1.42e-54 186.0
Artr9g01997 . 8 409 GRAS Transcription Factor family AT3G49950 44.63 1.23e-116 345.0
Artr9g02697 . 1 584 GRAS Transcription Factor family AT5G66770 52.773 0.0 521.0
Artr9g03345 . 1 530 GRAS Transcription Factor family AT4G37650 54.809 0.0 551.0
Artr9g03433 . 12 409 GRAS Transcription Factor family AT3G49950 61.259 0.0 520.0
Artr9g07043 . 1 92 GRAS Transcription Factor family AT1G66350 58.586 2.19e-26 101.0
Artr9g09533 . 91 555 GRAS Transcription Factor family AT4G00150 41.189 6.73e-106 327.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Artr GRAS 2.1e-127 CL0063 TF GRAS