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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Artr3g11194 ATGGCTGCCTTCAGATTTTCACCCAAAACTCATTCTCACTCTTGTGGTTGTGCTATTAACAATGAAGTGTTGCTGTTTTCAAAGACAAAATGGATTAGAACAAATTCAGTTAGATATGAAATGAAGGTCAAGTGCCAGGCAGCAGCACGTTTCTCAGCTGTTGCTGACGTGGAAAAGAGGAAGTTAATGAAGAGGTTGTTATTTGGTGCTGTTGTTGGTTTACCTGCTGCTGCTGGTTTGTTGGTTCCTTATACCGACTCTTTTGCTACACCTGGTTCAGGCAGTTCCAAAGGTGGCACTGTCGCCAAAGATGAGTTTAGTAACGATATCATTGCATCAGAATGGCTAAAGACCCACATACCTGGTGAAAGAATTCTTGCTCATGGCTTAAAGGGACATCCTACGTACCTTTTGGTCGAGAACAACAGAACGTTTGCAACATATGGGATTAATGTGGTATGCACCCATTTAGGGTGTATCGTGCCATGGAACACGGTGGAGAAGAAGTTTGTATGCCCCTGCCACGGTTCTCAGTTTGATAATGAGGGCAAAGTTGTCAAGGGTCCTGCTCCTCTGTCTTTGAAACTGGCTCGTGTGGATATAGATGATGGCAAAGTGGTGTTTGCTCCATGGAGGGAAACCGATTTTAGAACAGTAGATGCTCCATGGTGA 672 44.2 MAAFRFSPKTHSHSCGCAINNEVLLFSKTKWIRTNSVRYEMKVKCQAAARFSAVADVEKRKLMKRLLFGAVVGLPAAAGLLVPYTDSFATPGSGSSKGGTVAKDEFSNDIIASEWLKTHIPGERILAHGLKGHPTYLLVENNRTFATYGINVVCTHLGCIVPWNTVEKKFVCPCHGSQFDNEGKVVKGPAPLSLKLARVDIDDGKVVFAPWRETDFRTVDAPW* 224
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Artr3g11194 223 SUPERFAMILY ISP domain 103 218 IPR036922 GO:0051537(InterPro)
Artr3g11194 223 CDD Rieske-cytochrome-b6f 100 223 - -
Artr3g11194 223 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 41 212 IPR014349 GO:0005886(PANTHER)|GO:0016491(PANTHER)|GO:0051537(InterPro)
Artr3g11194 223 Pfam Rieske [2Fe-2S] domain 133 193 IPR017941 GO:0051537(InterPro)
Artr3g11194 223 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 112 208 IPR017941 GO:0051537(InterPro)
Artr3g11194 223 Gene3D Single helix bin 45 90 - -
Artr3g11194 223 Gene3D - 91 223 IPR036922 GO:0051537(InterPro)
Artr3g11194 223 PRINTS Rieske 2Fe-2S subunit signature 170 182 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Artr3g11194 223 PRINTS Rieske 2Fe-2S subunit signature 182 194 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Artr3g11194 223 PRINTS Rieske 2Fe-2S subunit signature 149 160 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Artr3g11194 223 FunFam Cytochrome b6-f complex iron-sulfur subunit 91 223 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Artr3g11194 K02636 cytochrome b6-f complex iron-sulfur subunit [EC:7.1.1.6]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Artr Artr-Chr1:42552257 Artr3g11194 Artr-Chr3:378079034 dispersed
Artr Artr-Chr3:378079034 Artr6g01831 Artr-Chr6:52677399 dispersed
Artr Artr-Chr3:377743816 Artr3g11194 Artr-Chr3:378079034 proximal