AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Artr3g11255 ATGACGCACAAGCAGGAGATTTTGTTTGGTTCTGGAGCTTGTGTAGCAATTACAGTTCTATTATCATTAAAGTTGCTAAATGATCATCTTACTCACTGGAAGAAACCAAAAGAACAAAAGGCGATTCTAGTGATTATATTGATGGCACCCATCTACGCTCTTGACTCGTATGTTGGATTACTCGATATACGTGGTAGTGAGACCTTTTTTCTGTTCTTAGACTCCGTCAAAGAATGCTATGAGGGTTTGGTGATGGCTAAGTTCTTGGCTTTGTTGTACACTTATTTGAATATATCTATAACCAAGAACATTGTCCCCGATGAGATTAAAGGAAGAGAAATTCATCATTCGTTCCCCATGACTCTCTTCCAGCCTCACTCGGTTCGTTTGAACCATCAAAACCTGAAGCTCCTCAAGTATTGGACATGGCAGTTTGTAGTAATTCGCCCAGTATGCTCCGTCTTGATGATAGTTCTACAACTCCTTGAGATATATCCTGATTGGCTTAGCTGGACATTCACTATGATCTTGAATGTATCTATTTCATTGGCATTATATGCTCTCGTGGTTTTTTACCATGTATTTGCTAAAGAATTGGCACCACATAAGCCTCTTGCAAAGTTCTTATGTGTCAAAGGGATTGTCTTCTTCTGTTTTTGGCAGGGAATTGTACTCAGTGGTTTGGTGGCAGTGGGCATAATTACATCAGATCATTTTTGGCTGGATGTGTCACATATCCAACAAGCATTGCAAAATGCATTGGTGATCGTGGAGATGGTGTTTTTCGCAGGCTTTCAGATGTATGCATACACTGCTGCACCATACAAGATTGATGAGGTGAAAGAAAAGAAGAAAGAATGA 861 39.84 MTHKQEILFGSGACVAITVLLSLKLLNDHLTHWKKPKEQKAILVIILMAPIYALDSYVGLLDIRGSETFFLFLDSVKECYEGLVMAKFLALLYTYLNISITKNIVPDEIKGREIHHSFPMTLFQPHSVRLNHQNLKLLKYWTWQFVVIRPVCSVLMIVLQLLEIYPDWLSWTFTMILNVSISLALYALVVFYHVFAKELAPHKPLAKFLCVKGIVFFCFWQGIVLSGLVAVGIITSDHFWLDVSHIQQALQNALVIVEMVFFAGFQMYAYTAAPYKIDEVKEKKKE* 287
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Artr3g11255 286 PANTHER ORGANIC SOLUTE TRANSPORTER-RELATED 8 278 IPR005178 GO:0005215(PANTHER)|GO:0006810(PANTHER)|GO:0016021(PANTHER)
Artr3g11255 286 SMART Solute-trans-a-2 7 275 IPR005178 -
Artr3g11255 286 Pfam Organic solute transporter Ostalpha 8 275 IPR005178 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Artr3g11255 K14360 organic solute transporter subunit alpha
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Artr Artr-Chr3:379907031 Artr5g06680 Artr-Chr5:225575751 dispersed
Artr Artr-Chr3:379907031 Artr4g05996 Artr-Chr4:205650160 transposed