AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Artr3g11257 ATGGAGACGCCGGGGTCGAAAAGGTTGTTGAGGAAGAAGTCGCTGTCGAGAAGCTATGATGAGAATTTAATGGATGATTATTTGGATAACCAGTTAGGTGGGTTGACTCGTAAAAGGTTTAGGACGAAACAGGAGTTGGAGAAAGAAACGGAAAAGGAAGCTATGATTGCTTTATCGTTAGGGTTTCCGATTGATGCGTTGCATGAAGAGGAAAGAAAAGCTAATGTAGTGAGTCAATTAGATGGTAAAGAACAGAATGATTATATTGTTGTGAGGAACCATATACTTGCTAGGTGGAGGGCTAATGTACAAGCGTGGCTTTCTAAAGGACAAATTAAGGAAACTGTTAGTAATGAATATGGTCAGTTGCTGAATTCGGCTTATGATTTTCTTATGTTTAATGGGTATATTAATTTTGGGGTTTCACCACCGTTCAAGGCTCAGGTGCCCGAGGAAGCAACCGAGGGGTCAGTGATAATCATTGGTGCAGGACTTGCAGGGTTAGCTGCAGCTCGCCAGCTGTTAGCTTTTGGTTTTAAGGTTATTGTTTTGGAGGGTAGGAATAGACCCGGCGGGAGAGTTTATACGCAGAAGATGGGGCAAAAGGGTAATTATGCTGCTGTTGATCTTGGTGGGAGTGTTATAACTGGTATCCACGCAAACCCTCTTGGGGTTTTGGCTAGACAGCTTTCGATACCTCTTCATAAAGTTAGAGATAAATGTCCATTGTATGATCCTGAGGGCCGACCTGTTGGCGATGAAATTGATTCCAAAGTAGAACATATTTTTAATAGGCTTTTAGATAAAGTTACTGAATTTAGACAAATTATGGGTAAATCAGCTGCTGATATATCTTTGGGTTCAGTTCTTGAGAGGCTTAGACAGATGTATACAGTGGCCACAAAGCCTGAGGAAAAACAGTTGCTCGACTGGCACTTTGCAAATTTAGAATATGCAAATGCGGGTTGCCTTTCACATCTCTCTGCTGTCTATTGGGATCAAGATGATCCCTACGAAATGAGTGGTGATCATTGCTTTCTTGCAGGTGGGAATTGGAGGTTAATTGAAGCATTGTGTGAAGGGGTTCCGATTTTCTATAACAAGACTGTCGAAACAATTCGATATGGTAATGATGGTGTTGAGGTGATTGCTGGTGATCAGACAATCCAAGCAGACATGGTGTTATGCACCGTTCCTCTTGGTGTCCTAAAGAAAAAGACCGTAAAGTTCGTACCAGAGTTACCAGAAAGAAAACTCAAGGCAATTGAAAAACTGGGATTTGGGTTGCTGAACAAAGTTGCTATGGTATTCCCTAGTGTCTTTTGGGGAGAAGATCTGGATACATTTGGCTGCCTTAGCAAGAATAGTGCTACGCGGGGAGAGTTCTTCTTGTTTTACGGTTATCATACGGTTTCCGGGGGTTCAGTACTTGTTGCATTAGTTGCTGGTGAAGCTGCCCAATCGTTTGAGCAAACTCAGCCATCCACTTTGCTTCATCGTGTTTTAAGCATCCTTAGAGGTATATATGGTCCAAAGGGTGTAGAGGTACCTGATCCCATCCAATCTATTTGTACAAAATGGGGAAATGATCCTCTATCTTATGGCTCATACTCTCATGTAAGGGTGCACTCTTCAGGTAGTGATTATGATGTACTTGCAGAAAATGTGGAAAACCGGCTTTTCTTTGCTGGTGAAGCCACAACCCGTCAACATCCAGCCACCATGCATGGGGCATACCTAAGTGGTTTAAGAGAAGCTTCGTGCATTTATAGAGCCTCGAGGGGTAGTAAGCCAATTCACAATCCTAGAAAAAGCTTTCGAAAAGTTGTTGGAGTGAGTGATACTCTTGTAAATCTTTTTAAGTATCCGGATATTGCTTTTGGGAACTTTAGTTTTGTATTTGATCCGTCAAATCAAGACCCTAAATCAACCGGGATTTTGATGGTCACTGTCGATAGTTTCAGTAGCGAGCTAGGTGATGATAATGGAAACGTCAAGAATAGTCAACAGTCTGACAAGCAACCATTGAAGCTTTATACGACTGTAACGCGTGTACAGGCACATGAGTTGGAGTCGGAGGTAGGTGGTGTTGAAAGTCAATTAAAATATCTATGTAAAAGTCTTGGGTTGAAGTTAATGGGATCAGATAGTTTTGCCCTCATAGCCAATTCATTGATTTCCAATGTTGCTTCACGTAGAGCGAGGGTCAGAAATCGGAGAGTTGCTGTAGGCAATGTTTCATACAAATGA 2250 42.04 METPGSKRLLRKKSLSRSYDENLMDDYLDNQLGGLTRKRFRTKQELEKETEKEAMIALSLGFPIDALHEEERKANVVSQLDGKEQNDYIVVRNHILARWRANVQAWLSKGQIKETVSNEYGQLLNSAYDFLMFNGYINFGVSPPFKAQVPEEATEGSVIIIGAGLAGLAAARQLLAFGFKVIVLEGRNRPGGRVYTQKMGQKGNYAAVDLGGSVITGIHANPLGVLARQLSIPLHKVRDKCPLYDPEGRPVGDEIDSKVEHIFNRLLDKVTEFRQIMGKSAADISLGSVLERLRQMYTVATKPEEKQLLDWHFANLEYANAGCLSHLSAVYWDQDDPYEMSGDHCFLAGGNWRLIEALCEGVPIFYNKTVETIRYGNDGVEVIAGDQTIQADMVLCTVPLGVLKKKTVKFVPELPERKLKAIEKLGFGLLNKVAMVFPSVFWGEDLDTFGCLSKNSATRGEFFLFYGYHTVSGGSVLVALVAGEAAQSFEQTQPSTLLHRVLSILRGIYGPKGVEVPDPIQSICTKWGNDPLSYGSYSHVRVHSSGSDYDVLAENVENRLFFAGEATTRQHPATMHGAYLSGLREASCIYRASRGSKPIHNPRKSFRKVVGVSDTLVNLFKYPDIAFGNFSFVFDPSNQDPKSTGILMVTVDSFSSELGDDNGNVKNSQQSDKQPLKLYTTVTRVQAHELESEVGGVESQLKYLCKSLGLKLMGSDSFALIANSLISNVASRRARVRNRRVAVGNVSYK* 750
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Artr3g11257 749 Gene3D - 240 545 - -
Artr3g11257 749 Gene3D - 52 151 IPR036388 -
Artr3g11257 749 SUPERFAMILY FAD-linked reductases, C-terminal domain 426 538 - -
Artr3g11257 749 FunFam Lysine-specific histone demethylase 1A 52 152 - -
Artr3g11257 749 PANTHER FLAVIN MONOAMINE OXIDASE 61 590 IPR050281 GO:0016491(PANTHER)
Artr3g11257 749 SUPERFAMILY FAD-NAD(P)-binding domain 156 591 IPR036188 -
Artr3g11257 749 SUPERFAMILY Homeodomain-like 49 150 IPR009057 -
Artr3g11257 749 Gene3D - 158 587 IPR036188 -
Artr3g11257 749 ProSiteProfiles SWIRM domain profile. 47 148 IPR007526 GO:0005515(InterPro)
Artr3g11257 749 Pfam SWIRM domain 65 139 IPR007526 GO:0005515(InterPro)
Artr3g11257 749 Pfam Flavin containing amine oxidoreductase 165 589 IPR002937 GO:0016491(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Artr3g11257 K11450 [histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase [EC:1.14.99.66]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Artr Artr-Chr1:104968398 Artr3g11257 Artr-Chr3:379932872 dispersed
Artr Artr-Chr1:131788055 Artr3g11257 Artr-Chr3:379932872 dispersed
Artr Artr-Chr3:379932872 Artr6g02868 Artr-Chr6:84881991 dispersed
Artr Artr-Chr3:379932872 Artr7g00239 Artr-Chr7:9464750 transposed
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Artr Amino_oxidase 1.5e-94 CL0063 TR SWI/SNF-SWI3