AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Artr3g11262 ATGGAGTATGAAAAAGAATTAGAAGTGGGTGTAAGAGTGGTTCAGTTAGCATGTTGTTTATGTCAAAAGATACAAAAGGGGTCATTTGGTCCTAACCCTGATCTTGTTGTTTCTAAACTTGATGATTCTCCTGTTACTGTTGCTGATTGGAGTGTACAAGCAATGATTAGTTGGATACTATCAGAATCATTCGGTAGAGAAAATGTCTCGATTGTCGCGGAAGAAGACACACAAACCCTTTCCGATGTCAAATCCACATCTTTATTAGCATCTGTGGTGGCAACTGTTAATGAAAGTTTAGCCATGGCACACCGGTTCGGTCTCAATGGTCCAACCGCACCCCTCGAGGCTTCAGAAGTTCTTGATGCCATTAGCCGATGTAATTCAAGTGGTGGTCCAGTGGGAAGGCATTGGGTCCTTGACCCCGTTGATGGAACTTTAGGGTTTGTTCGTGGAAGTCAGTATGCGGTGGCTCTGGCTTTGATCGAAAATGGGCGGGTGGTGGTTGGGGTTCTTGGGTGCCCTAATTATTCGAGTAAAAGGAAATTGGTTAATAATTCAAGTGTACCAAAATCAGATTTGTGGCAAGAAGGGTGTGTTATGTATACAAAAAGAGGTAGTGGTCAAGCTTGGATGCAGCCGTTGGTTTGTGGTGATGGGACACTTGAGTGGCCTAATTCGGCTAGTGTTATACAGGTTTCCTCCATTGATAATCCTGTTATGGCTACGTTTTGTGAACCAGTGGAAAAAGCTAACTCTAACCATTCGTATAGTGCTGGAATCGCTTACAGTTTAGGCCTTAGCATGGTAAAATACGCAGCCATAGCACGAGGAGATGCAGAGATATACATGAAGTTTGCAAAAGCTGGATACAAGGAAAAGATATGGGATCATGCTGCTGGTGTGGTGATTGTAGAAGAAGCTGGCGGGGTTGTGACAGATGTAGGTGGTCGGCCCTTAGATTTTTCAAAAGGGGTGTATCTTGAAGGTCTTGATCGGGGGATTGTGGCATGTTGCGGGGTGAATTTGCATGAGAAAATTATAGGTGCTGTTTATGCAAGCTGGGATTCTTCTCACTTGTGA 1083 44.04 MEYEKELEVGVRVVQLACCLCQKIQKGSFGPNPDLVVSKLDDSPVTVADWSVQAMISWILSESFGRENVSIVAEEDTQTLSDVKSTSLLASVVATVNESLAMAHRFGLNGPTAPLEASEVLDAISRCNSSGGPVGRHWVLDPVDGTLGFVRGSQYAVALALIENGRVVVGVLGCPNYSSKRKLVNNSSVPKSDLWQEGCVMYTKRGSGQAWMQPLVCGDGTLEWPNSASVIQVSSIDNPVMATFCEPVEKANSNHSYSAGIAYSLGLSMVKYAAIARGDAEIYMKFAKAGYKEKIWDHAAGVVIVEEAGGVVTDVGGRPLDFSKGVYLEGLDRGIVACCGVNLHEKIIGAVYASWDSSHL* 361
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Artr3g11262 360 NCBIfam 3'(2'),5'-bisphosphate nucleotidase 3 358 IPR006239 GO:0006790(InterPro)|GO:0008441(InterPro)
Artr3g11262 360 Gene3D - 232 354 - -
Artr3g11262 360 Gene3D - 1 219 - -
Artr3g11262 360 FunFam PAP-specific phosphatase HAL2-like 232 357 - -
Artr3g11262 360 ProSitePatterns Inositol monophosphatase family signature 1. 138 151 IPR020583 -
Artr3g11262 360 PRINTS Inositol monophosphatase superfamily signature 43 63 IPR000760 -
Artr3g11262 360 PRINTS Inositol monophosphatase superfamily signature 293 317 IPR000760 -
Artr3g11262 360 Pfam Inositol monophosphatase family 42 331 IPR000760 -
Artr3g11262 360 ProSitePatterns Inositol monophosphatase family signature 2. 296 310 IPR020550 GO:0046854(InterPro)
Artr3g11262 360 CDD PAP-phosphatase 6 353 - -
Artr3g11262 360 SUPERFAMILY Carbohydrate phosphatase 3 353 - -
Artr3g11262 360 PANTHER PHOSPHATASE 2 356 IPR051090 GO:0000103(PANTHER)|GO:0008441(PANTHER)|GO:0042578(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Artr3g11262 K01082 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Artr Artr-Chr3:380131604 Artr8g05651 Artr-Chr8:194970422 dispersed