AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Artr3g11295 ATGGGCAAAAAGCGAAAGCACGCAGAAGTTGAAGCAGTGCCGGAGAAGAAAGAGAAGGTGGCACCGGAGAGACCACCTAGGACACTTTTTGGTTGGAAAAACAAACCAACTCAAAATGACCAAGAAACTTTTAGGAATAAAGAGAAAGTTCTTGTTACTTGTTCTCGCAGGATCAATTACAGGTATCGGCATTTGATGTTGAATTTGGTGTCGATTTTACCTCATTGCAAGAAAGATAGCAAAGTTGAGTCTAAAGCTACCAAAGGTGCAACTTTGAATGAGCTTGTTGAGCTCAAGAATTGTTCTTCATGCCTCTTCTTTGAGTGTAGGAAACACAAGGATCTTTACTTGTGGATGTCAAAGTGCCCAAATGGTCCATCTGTGAAGTTCTTAGTGAATGCAGTTCACACAATGGAAGAGTTAAAGCTCACTGGAAACCATCTTAAAGGCGCACGCCCTCTTCTTACCTTTTCATCAAATTTTGATAAAGACCCACACTGGAAACTTCTCAAGGAGATGATTACTCAGATATTTGGAACTCCAAAGGAGCACAGGAAATCAAAGCCCTATTATGACCATGTATTTGTGTTCTCTATCGTTGATGACCACATATGGTTCCGTAATTACCAGATATCGTGTCCACATACTGGAGATGATAAAATCGATCGAGGGGGCCTTGACAAGATGACCCTTATTGAGGTTGGTCCAAGGTTTTGTTTAAACCCAATCAAGATATTTGGTGGTAGCTTTGGAGGTCCAACTCTATATGAGAACCCGTTCTACGTTTCACCAAATCAGATACGGTCATTAGAGAAGAGAAAGAAGGCTGGTAAGTATGCAAACAAGGTTAAAGCCAAGACAAAAAGAAGCATGCATACGATGGAAAACCAATTGGTATCTGATGAAATAGAAGGCTTGTGGAAGGCATAA 930 40.86 MGKKRKHAEVEAVPEKKEKVAPERPPRTLFGWKNKPTQNDQETFRNKEKVLVTCSRRINYRYRHLMLNLVSILPHCKKDSKVESKATKGATLNELVELKNCSSCLFFECRKHKDLYLWMSKCPNGPSVKFLVNAVHTMEELKLTGNHLKGARPLLTFSSNFDKDPHWKLLKEMITQIFGTPKEHRKSKPYYDHVFVFSIVDDHIWFRNYQISCPHTGDDKIDRGGLDKMTLIEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRSLEKRKKAGKYANKVKAKTKRSMHTMENQLVSDEIEGLWKA* 310
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Artr3g11295 309 ProSiteProfiles Brix domain profile. 48 251 IPR007109 GO:0006364(InterPro)|GO:0019843(InterPro)
Artr3g11295 309 SMART Brix-2 51 245 IPR007109 GO:0006364(InterPro)|GO:0019843(InterPro)
Artr3g11295 309 MobiDBLite consensus disorder prediction 1 38 - -
Artr3g11295 309 Gene3D - 48 241 - -
Artr3g11295 309 SUPERFAMILY Class II aaRS ABD-related 49 248 - -
Artr3g11295 309 PANTHER RIBOSOME BIOGENESIS PROTEIN BRIX 2 308 IPR026532 GO:0000027(PANTHER)|GO:0003723(PANTHER)|GO:0005730(PANTHER)
Artr3g11295 309 Pfam Brix domain 55 244 IPR007109 GO:0006364(InterPro)|GO:0019843(InterPro)
Artr3g11295 309 MobiDBLite consensus disorder prediction 1 24 - -
Artr3g11295 309 FunFam Ribosome biogenesis protein, putative 49 240 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Artr3g11295 K14820 ribosome biogenesis protein BRX1