AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Artr3g11322 ATGACAACAAACGGCGTGAAGATGGCATTAACATCACAAGCATACTTAGACGGATCCTCAGTAAAACAAACGAAGTCATTAATAACAGAGCTATGTCGTTTGTTTTATAACTTGGGCTGGGTTGGTGGTACCGGTGGAAGTATTACTGCTAAAGTGCACGATGATTTTGTTCCTAAGTCTGATCAGCTTATTATCATGTCTCCTTCTGGTGTGCAGAAGGAAAGAATGGTTGAAGAAGATATGTATGTGTTATCGTCAACCGGAGATATTTTGTTTACGCCATCACCGAAACCTTACCCTCATAAGCCTCCAAAGTGTTCAGACTGTGCCTCTCTTTTCATGAAGGCTTATAATATGCGTAATGCTGGTGCAGTCATTCATAGTCATGGAATGGAATCTTGTATTGTGACAATGCTTGATCCTTTGGCAAAAGAGTTTAGGATCACTCATATGGAGATGATTAAAGGGATTCAAGGGCATGGCTATTATGATGAGCTTGTGGTTCCCATAATAGAAAACACTGCTCACGAGAGAGAGTTGACTGAATATCTTGCTGCAGCGATTGAAGCGTACCCAAAAACAACTGCTGTACTGGTCCGAAATCATGGTATCTATGTATGGGGCGATACCTGGATTAGTGCCAAAACTCAGGCTGAATGCTACCACTATCTCTTTGAAGCTGCAATCAAACTTCACCAATTGGGCCTTGATTGGTCAACTCCAGGTCATGGTCCCATACAAAGATCCAAACCACTTTTAGGTGATCAAACTACAAGCACATCTCAAAAGCGTTGTATTGTTCTGGATATTGAAGGGACAACTACTCCTATATCATTTGTCACAGATGTTCTTTTCCCGTATGCCCGTAAAAATGTTCAAAGGCATTTGGAAGCAACATACGATACTGATGCTACGCAAGATGATATTAAGTTGTTGCGCTCTCAAGTACAAGATGATTTACAAAACGGAGTTGCGGATGCCGTTCCTATCCCATCTGATGAGGTGGGAAAAGAGAAGGTGATAGCTGCTTTGGTCGCTAATGTTGAAGGAATGATAAAATCTGACAGGAAAATTACTTCCTTAAAACAGTTACAAGGTCACATATGGCAAACTGGATTTGAGAAAAATGAACTGAAAGGTGTGGTTTTTGATGATGTCCCTAGCGCTCTTGAAAAGTGGCATGCTTCTGGTATAAAGGTGTATATATATTCAAGTGGTAGCAGATTAGCACAGAGGCTGTTATTTGGATATACCAATTATGGAGACTTGAGAAACTACTTGTGCGGATTTTTTGACACCACAGTGGGGAACAAGAAAGAAACAAAGAGTTATGTTGAAATATTAGAATCACTTGGAGTTCATAAGCCATCTGAAGTCCTGTTTGTAACCGATATCTATCAAGAAGCTGTAGCTGCAAAGGCAGCTGGCTTGGAGGTGACGATCTCTGTTCGGCCCGGAAATGGACCACTTCCCGAGAATCATGGTTTCAAGACAATCAAGTCTTTTTCGGAGATATGA 1518 41.11 MTTNGVKMALTSQAYLDGSSVKQTKSLITELCRLFYNLGWVGGTGGSITAKVHDDFVPKSDQLIIMSPSGVQKERMVEEDMYVLSSTGDILFTPSPKPYPHKPPKCSDCASLFMKAYNMRNAGAVIHSHGMESCIVTMLDPLAKEFRITHMEMIKGIQGHGYYDELVVPIIENTAHERELTEYLAAAIEAYPKTTAVLVRNHGIYVWGDTWISAKTQAECYHYLFEAAIKLHQLGLDWSTPGHGPIQRSKPLLGDQTTSTSQKRCIVLDIEGTTTPISFVTDVLFPYARKNVQRHLEATYDTDATQDDIKLLRSQVQDDLQNGVADAVPIPSDEVGKEKVIAALVANVEGMIKSDRKITSLKQLQGHIWQTGFEKNELKGVVFDDVPSALEKWHASGIKVYIYSSGSRLAQRLLFGYTNYGDLRNYLCGFFDTTVGNKKETKSYVEILESLGVHKPSEVLFVTDIYQEAVAAKAAGLEVTISVRPGNGPLPENHGFKTIKSFSEI* 506
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Artr3g11322 505 Hamap Probable bifunctional methylthioribulose-1-phosphate dehydratase-enolase-phosphatase E1. 13 505 IPR027505 -
Artr3g11322 505 Gene3D - 373 505 IPR023214 -
Artr3g11322 505 SMART Aldolase-II-2 26 229 IPR001303 -
Artr3g11322 505 NCBIfam acireductone synthase 264 504 IPR023943 GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro)
Artr3g11322 505 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase-enolase-phosphatase E1 21 246 - -
Artr3g11322 505 Hamap Enolase-phosphatase E1 [ENOPH1]. 264 505 IPR027511 GO:0019509(InterPro)
Artr3g11322 505 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase-enolase-phosphatase E1 277 373 - -
Artr3g11322 505 CDD HAD-EP 265 486 IPR023943 GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro)
Artr3g11322 505 Hamap Methylthioribulose-1-phosphate dehydratase [APIP]. 13 237 IPR027514 GO:0005737(InterPro)|GO:0019509(InterPro)|GO:0046872(InterPro)
Artr3g11322 505 SFLD enolase-phosphatase 264 504 IPR023943 GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro)
Artr3g11322 505 NCBIfam methylthioribulose 1-phosphate dehydratase 28 234 IPR017714 GO:0005737(InterPro)|GO:0019509(InterPro)|GO:0046872(InterPro)
Artr3g11322 505 Gene3D - 21 245 IPR036409 -
Artr3g11322 505 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase-enolase-phosphatase E1 373 505 - -
Artr3g11322 505 Pfam haloacid dehalogenase-like hydrolase 264 476 - -
Artr3g11322 505 Gene3D - 277 372 - -
Artr3g11322 505 Pfam Class II Aldolase and Adducin N-terminal domain 28 228 IPR001303 -
Artr3g11322 505 SUPERFAMILY AraD-HMP-PK domain-like 22 241 IPR036409 -
Artr3g11322 505 PANTHER ENOLASE-PHOSPHATASE E1 258 505 - GO:0019509(PANTHER)|GO:0043874(PANTHER)
Artr3g11322 505 SUPERFAMILY HAD-like 260 505 IPR036412 -
Artr3g11322 505 SFLD C1.5.4: Enolase-phosphatase Like 264 504 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Artr3g11322 K16054 methylthioribulose 1-phosphate dehydratase / enolase-phosphatase E1 [EC:4.2.1.109 3.1.3.77]
Artr3g11322 K09880 enolase-phosphatase E1 [EC:3.1.3.77]
Artr3g11322 K08964 methylthioribulose-1-phosphate dehydratase [EC:4.2.1.109]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Artr Artr-Chr1:45848648 Artr3g11322 Artr-Chr3:382409069 dispersed
Artr Artr-Chr3:382409069 Artr7g04873 Artr-Chr7:184581182 dispersed