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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Artr3g11384 ATGGCACAATTGCCGCCAAAAGTGCCAACAATGGCGCAAAATTGGCTCTCATATCCTTACAATCAAATGATGTCAATGCCATCTTCGGCTGCTCAGCCGCCGAATTGGGTTGATGAGTTTCTCGATTTTTCTTCAGTGAGGAGGAATTCGCATAGAAGATCTGTGAGTGATCCTATCGCGTTTGTGGAGTCTCCTTTTATAGAAGAATGTGGTAATACTAATGGGAATTGTGGTAATAATACTGTTGGATTTGAACGGTTGGATGATGAGCAGTTTAGTTCCATGTTTGCTGATGACGTTGGGACGAATGTGCCTACCTCGACTAGATCTTCGTCGAATCCTTCTACGCCTTCGGATCAAAATAGTGATAATGATGAGGGGAAGGTTACATTGCCACTAGACCAACACAAGCACCAACAAGAGCAGCAGCAACAACAACAGCCGAAGAACGAGCCTGGTGAGGTAGAAGATGGGAGTGGTTGTCAACCTGAGATGGATTCGGCTAAACCGTGCTTTAATTTCTCGAGCGATGGTAGCACCATTGTTGATCCAAAGAGAGTGAAAAGGATTTTGGCAAATCGTCAATCTGCTCAGAGATCACGAGTGAGAAAGTTGCAATACATTTCTGAACTCGAACGCAGTGTTAGTACATTACAGACCGAAGTGTCCGCATTGTCACCACGGGTAGCGTTTTTGGACCACCAAAGATTGGTTCTAAATGTTGATAACAGCGCGCTCAAGCAACGAATAGCAGCTTTGGCTCAAGACAAGATTTTCAAAGATGCGCATCAAGAAGCATTAAAGAAAGAGATCGAGAGGTTACGAAAAGTGTATCAAGAACAAAACATGCAAAAGGCTGAGAACAACAACGATGACAACAACAACAAGAACGACGCCACGGCCACCGGTGAAAACAACGGTTGCTCCATGAATGGTTCGGAGGGAGGTGAAAGGTTGTGCTAA 963 44.65 MAQLPPKVPTMAQNWLSYPYNQMMSMPSSAAQPPNWVDEFLDFSSVRRNSHRRSVSDPIAFVESPFIEECGNTNGNCGNNTVGFERLDDEQFSSMFADDVGTNVPTSTRSSSNPSTPSDQNSDNDEGKVTLPLDQHKHQQEQQQQQQPKNEPGEVEDGSGCQPEMDSAKPCFNFSSDGSTIVDPKRVKRILANRQSAQRSRVRKLQYISELERSVSTLQTEVSALSPRVAFLDHQRLVLNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRKVYQEQNMQKAENNNDDNNNKNDATATGENNGCSMNGSEGGERLC* 321
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Artr3g11384 320 FunFam Basic leucine zipper 61 184 257 - -
Artr3g11384 320 MobiDBLite consensus disorder prediction 284 320 - -
Artr3g11384 320 SUPERFAMILY Leucine zipper domain 185 239 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Artr3g11384 320 MobiDBLite consensus disorder prediction 136 152 - -
Artr3g11384 320 Coils Coil 260 296 - -
Artr3g11384 320 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 183 246 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Artr3g11384 320 MobiDBLite consensus disorder prediction 284 312 - -
Artr3g11384 320 MobiDBLite consensus disorder prediction 98 176 - -
Artr3g11384 320 Pfam bZIP transcription factor 185 230 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Artr3g11384 320 PANTHER BASIC LEUCINE ZIPPER 34 1 297 IPR052483 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0045893(PANTHER)
Artr3g11384 320 SMART brlzneu 181 245 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Artr3g11384 320 CDD bZIP-plant-RF2 186 236 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Artr3g11384 320 Gene3D - 184 256 - -
Artr3g11384 320 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 188 203 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Artr3g11384 320 MobiDBLite consensus disorder prediction 98 128 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Artr3g11384 K20557 transcription factor VIP1
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Artr Artr-Chr1:178977223 Artr3g11384 Artr-Chr3:384516522 dispersed
Artr Artr-Chr3:320559249 Artr3g11384 Artr-Chr3:384516522 dispersed
Artr Artr-Chr3:384516522 Artr7g03276 Artr-Chr7:125896605 dispersed
Artr Artr-Chr3:384516522 Artr5g12350 Artr-Chr5:425958691 transposed
Artr Artr-Chr3:384516522 Artr5g12580 Artr-Chr5:433882334 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Artr1g01752 . 249 348 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G08320 32.381 7.78e-09 51.6
Artr1g02364 ACH 37 120 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 65.476 3.30e-34 115.0
Artr1g02414 ACH 21 159 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G34590 47.857 3.00e-37 123.0
Artr1g02565 . 22 392 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G49720 44.472 4.27e-77 241.0
Artr1g03202 ACH 211 300 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 53.333 2.08e-23 97.8
Artr1g03432 . 1 241 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G16770 48.263 1.90e-71 218.0
Artr1g04279 . 26 365 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G40620 53.429 5.24e-95 283.0
Artr1g05445 . 1 227 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35040 65.532 1.28e-105 305.0
Artr1g05606 . 1 553 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G38900 55.5 3.96e-177 509.0
Artr1g06136 . 1 306 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 51.672 3.45e-94 280.0
Artr1g09045 . 188 229 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 52.381 4.66e-07 43.5
Artr1g11804 ACH 10 171 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 49.102 7.20e-40 130.0
Artr1g14509 . 16 337 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G43700 48.968 6.18e-81 247.0
Artr1g14869 . 236 380 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G46270 53.548 8.40e-36 128.0
Artr1g14870 . 236 381 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G46270 55.556 8.55e-40 138.0
Artr1g15889 . 276 443 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G08320 28.729 1.02e-16 76.6
Artr2g05015 ACH 5 164 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 51.497 9.11e-50 156.0
Artr2g05034 ACH 5 164 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 51.497 9.11e-50 156.0
Artr2g06398 . 41 300 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 31.802 3.06e-24 100.0
Artr2g07954 . 1 330 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 64.458 1.79e-145 416.0
Artr2g11455 . 125 308 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G35530 54.211 4.57e-42 157.0
Artr3g02413 ACH 1 381 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G46270 50.481 9.04e-110 325.0
Artr3g03559 . 8 142 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G62420 57.037 6.04e-52 160.0
Artr3g05008 . 12 297 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G56850 52.322 4.19e-94 279.0
Artr3g09182 . 1 92 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 59.14 1.50e-20 87.4
Artr3g09643 ACH 211 300 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 53.333 2.73e-23 97.4
Artr3g10624 . 61 140 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G36730 47.253 2.55e-14 65.1
Artr3g11384 . 1 311 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 55.247 5.30e-99 293.0
Artr3g12391 ACH 19 164 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 48.322 2.42e-38 126.0
Artr3g13025 . 1 392 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G49720 46.512 1.14e-93 285.0
Artr4g04111 . 1 440 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G36270 48.322 9.85e-108 323.0
Artr4g04642 . 21 416 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06839 57.589 1.29e-172 491.0
Artr4g05052 . 1 297 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G56850 49.55 7.90e-87 260.0
Artr4g09001 . 25 152 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G11260 75.781 4.82e-60 182.0
Artr5g01520 . 34 277 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G24800 52.091 6.08e-70 218.0
Artr5g01827 . 1 388 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G35530 60.15 3.11e-148 424.0
Artr5g03881 . 1 78 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G32150 52.564 1.10e-16 70.9
Artr5g08087 . 120 313 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06950 27.801 3.59e-19 83.6
Artr5g08091 . 105 313 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06950 26.275 3.76e-17 78.2
Artr5g08475 . 21 128 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G62420 38.889 2.32e-19 77.0
Artr5g09820 . 188 229 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 52.381 4.66e-07 43.5
Artr5g12350 . 63 335 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G06070 49.091 1.38e-67 213.0
Artr5g12580 . 35 335 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G06070 50.321 1.02e-87 267.0
Artr6g01007 ACH 49 152 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G49760 48.077 1.99e-19 78.6
Artr6g01009 . 49 152 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G49760 49.038 1.64e-19 78.6
Artr6g02430 ACH 21 416 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G45249 52.885 3.60e-113 336.0
Artr6g02808 ACH 9 164 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 49.068 3.51e-45 144.0
Artr6g05542 . 29 167 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 60.432 1.80e-48 155.0
Artr6g06981 . 62 285 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35900 41.772 1.94e-36 129.0
Artr6g07297 . 24 302 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G28770 43.478 3.34e-72 228.0
Artr6g12444 . 99 270 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G03970 48.619 1.79e-38 132.0
Artr7g00105 . 155 218 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G42990 60.0 2.53e-17 79.0
Artr7g00976 . 217 285 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35900 53.623 9.60e-16 70.9
Artr7g02183 . 1 330 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 75.455 9.61e-179 496.0
Artr7g03276 . 21 339 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G06070 67.941 5.24e-151 432.0
Artr7g06186 . 211 293 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 49.398 4.87e-18 80.9
Artr7g07649 . 236 381 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G46270 54.487 9.94e-37 130.0
Artr7g07650 . 236 381 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G46270 55.128 2.06e-37 132.0
Artr7g08627 ACH 22 214 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G22850 36.082 3.74e-27 100.0
Artr7g10435 . 1 367 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G40620 53.704 8.44e-106 312.0
Artr8g02789 . 23 167 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 56.849 9.56e-44 142.0
Artr8g03788 ACH 4 381 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G46270 47.783 1.46e-93 283.0
Artr8g07636 ACH 21 416 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G45249 54.632 6.14e-119 351.0
Artr9g00742 . 1 330 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 73.636 6.84e-175 486.0
Artr9g02764 . 1 302 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G36730 55.714 1.08e-107 316.0
Artr9g03301 ACH 5 155 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G49760 41.875 1.34e-25 94.7
Artr9g03894 . 52 167 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 68.966 7.17e-49 154.0
Artr9g04883 . 23 167 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 52.703 1.06e-40 133.0
Artr9g04890 . 25 158 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 51.111 6.06e-35 118.0
Artr9g05239 . 13 452 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G68640 58.568 4.03e-162 464.0
Artr9g06115 . 1 145 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35040 69.178 3.93e-66 201.0
Artr9g06282 . 54 517 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G38900 51.245 1.89e-124 371.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Artr bZIP_1 1.5e-09 CL0018 TF bZIP