AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Artr3g11455 ATGCTTAACTTGGCCAATCTGGCAGAAGAGGTTCAGATTGCGTATCGTCGCAGGATCAAGTTGAAGAAGGGTGACTTTGCTGATGAAGCTAATGCAACGACTGAATCTGATATCGAGGAGACTTTGAAGAAGCTTGTGCATCAGCTTAATAAGTCCCCTGAAGAGGTGTTTGACGCACTCAATAATCAGACTGTTGATTTGGTTTTGACTGCTCATCCAACGCAGTCTGTTCGTAGATCTTTGCTTCAGAAGCATGGAAGGATCCGGAACTGTTTGGCTCAGTTATATGCCAAAGACATCACTCCTGATGATAAGCAGGAACTTGATGAGGCTTTGCATAGAGAAATTCAAGCTGCTTTCCGTACAGATGAGATCAGGAGGACTCCTCCAACTCCACAAGATGAGATGAGAGCGGGAATGAGCTACTTCCATGAAACAATCTGGAAGGGTGTTCCTAAATTCTTACGTCGTGTTGACACGGCTCTTAAGAACATTGGGATCAATGAACGTGTTCCCTACAATGCCCCTCTTATTCAGTTCTCTTCATGGATGGGTGGTGACCGTGATGGTAATCCAAGGGTGACACCTGAGGTAACAAGGGATGTTTGCTTACTTGCCAGAATGATGGCAGCCAACATGTACTTTTCCCAGATAGAGGATCTAATGTTTGAGATGTCCATGTGGCGTTGTACTGATGAACTTCGTGTTCGAGCAGAAGAACTTTATAGATCAGCAAGGAGTGATGTGAAGCACTACATAGAGTTCTGGAAACAGGTTCCTCCAACTGAACCTTATCGTGTAATTCTTGGAGATGTAAGGGATAAGTTATATAATACACGTGAACGAGCTCGACATCTCTTAGCCCATGAGAAATCCGACATTCCAGAAGAGTTTGTTTATACAAATGTTGAACAGTTCTTGGAGCCTCTCGAGCTATGCTACCGATCACTGTGTGCTTGTGGTGATCGTGTGATTGCTGATGGAAGCCTTCTTGATTTTCTAAGACAAGTGTCCACATTTGGACTCTCGCTAGTAAAACTCGATATAAGGCAAGAATCTGATCGCCACACTGATGTCCTCGATGCCATCACTCAACATTTAGAAGTTGGTTCCTACCGTGAATGGTCAGAAGAGAAACGTCAAGAATGGCTTCTGTCTGAACTCAGCGGTAAACGTCCACTTTTTGGTGATGATCTTCCCAAAACTGAGGAAATTAAGGATGTTTTGGATACATTCGCTGTCTTAGCAGAACTCCCATCTGATTGTTTTGGTGCTTACATCATTTCAATGGCTACATCACCTTCTGATGTGCTTGCTGTTGAGCTTCTTCAACGTGAATGCCATGTGAAGCAACCGTTACGTGTGGTCCCACTTTTTGAAAAACTTGCTGATCTTGAAGCGGCTCCCGCTGCCATGGCCCGTCTTTTCTCAGTTGACTGGTACACTAAACGGATCAACGGGAAGCAAGAAGTCATGATTGGATACTCTGATTCAGGAAAAGATGCTGGAAGGTTTACTGCTGCATGGCAGCTATACAAAGCGCAAGAAGAGCTTATTAAAGTTGCAAAGGAGTTTGGAGTCAAACTCGTCATGTTCCATGGACGTGGTGGGACTGTCGGTAGAGGAGGTGGCCCCACCCATCTTGCTATCCTGTCTCAGCCACCAGAGACCATTCATGGGTCTCTTAGAGTCACAGTTCAAGGAGAGGTTATTGAACAATCTTTTGGTGAGGAACATTTGTGTTTCAGAACACTTCAAAGGTTTTGTGCAGCTACACTTGAGCATGGAATGAACCCCCCAATCTCACCACGACCCGAATGGCGTCAACTTATGGACGAGATAGCAGTTCTTGCAACCGAACAATACCGTTCAATTGTATTCCAGGAGCCACGTTTTGTCGAGTATTTCCGCCTTGCCACACCGGAACTGGAGTACGGACGTATGAATATCGGAAGTCGCCCAGCAAAAAGAAAACCGAGTGGAGGCATTGAATCACTCCGAGCTATTCCATGGATCTTTGCATGGACTCAGACCAGGTTCCATCTCCCGGTTTGGCTCGGGTTTGGGGCAGGATTCAAGCATGTCATTCAAAAGGACAGCAAGAATCTTCAAATGCTACAAGAAATGTACAAAACCTGGCCTTTCTTTAGAGTGACCATTGATTTAGTTGAAATGGTGTTTGCTAAAGGAGACCCGGGTATTGCTGCACTGAACGACAAGCTCCTGGTCTCTGAAGATCTCTGGTCTTTTGGAGAATCTTTGAGGGCAAACTATGAAGAAACAAAGGATTATCTCCTCATGATTGCTGGACATAAGGACCTTCTCGAGGGAGATCCCTACTTGAAACAGAGACTTCGTCTGCGTGATTCATACATCACAACATTGAATGTGTGCCAAACTTATACCCTCAAGCGAATCCGTGATCCAAACTATCATGTGACATTAAGGCCTCACATCTCTAAAGAGTATGCTGAGCCAAGCAAACCTGCAGATGAACTTATCCACTTGAACCCGACCAGTGAGTATGCACCAGGTTTGGAGGACACTCTTATCCTGACCATGAAGGGAATTGCTGCTGGTATGCAGAACACCGGTTAA 2598 45.15 MLNLANLAEEVQIAYRRRIKLKKGDFADEANATTESDIEETLKKLVHQLNKSPEEVFDALNNQTVDLVLTAHPTQSVRRSLLQKHGRIRNCLAQLYAKDITPDDKQELDEALHREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANMYFSQIEDLMFEMSMWRCTDELRVRAEELYRSARSDVKHYIEFWKQVPPTEPYRVILGDVRDKLYNTRERARHLLAHEKSDIPEEFVYTNVEQFLEPLELCYRSLCACGDRVIADGSLLDFLRQVSTFGLSLVKLDIRQESDRHTDVLDAITQHLEVGSYREWSEEKRQEWLLSELSGKRPLFGDDLPKTEEIKDVLDTFAVLAELPSDCFGAYIISMATSPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAAMARLFSVDWYTKRINGKQEVMIGYSDSGKDAGRFTAAWQLYKAQEELIKVAKEFGVKLVMFHGRGGTVGRGGGPTHLAILSQPPETIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFCAATLEHGMNPPISPRPEWRQLMDEIAVLATEQYRSIVFQEPRFVEYFRLATPELEYGRMNIGSRPAKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAGFKHVIQKDSKNLQMLQEMYKTWPFFRVTIDLVEMVFAKGDPGIAALNDKLLVSEDLWSFGESLRANYEETKDYLLMIAGHKDLLEGDPYLKQRLRLRDSYITTLNVCQTYTLKRIRDPNYHVTLRPHISKEYAEPSKPADELIHLNPTSEYAPGLEDTLILTMKGIAAGMQNTG* 866
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Artr3g11455 865 FunFam Phosphoenolpyruvate carboxylase 1 208 343 - -
Artr3g11455 865 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 491 503 IPR033129 -
Artr3g11455 865 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 68 79 IPR018129 -
Artr3g11455 865 Hamap Phosphoenolpyruvate carboxylase [ppc]. 1 865 IPR022805 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Artr3g11455 865 Pfam Phosphoenolpyruvate carboxylase 1 865 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Artr3g11455 865 Gene3D Phosphoenolpyruvate-pyruvate domain 208 343 - -
Artr3g11455 865 SUPERFAMILY Phosphoenolpyruvate-pyruvate domain 1 865 IPR015813 GO:0003824(InterPro)
Artr3g11455 865 PRINTS Phosphoenolpyruvate carboxylase signature 340 360 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Artr3g11455 865 PRINTS Phosphoenolpyruvate carboxylase signature 489 509 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Artr3g11455 865 PRINTS Phosphoenolpyruvate carboxylase signature 67 80 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Artr3g11455 865 PRINTS Phosphoenolpyruvate carboxylase signature 531 560 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Artr3g11455 865 PRINTS Phosphoenolpyruvate carboxylase signature 663 689 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Artr3g11455 865 PRINTS Phosphoenolpyruvate carboxylase signature 180 195 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Artr3g11455 865 PRINTS Phosphoenolpyruvate carboxylase signature 120 136 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Artr3g11455 865 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 1 865 IPR021135 GO:0005829(PANTHER)|GO:0006099(InterPro)|GO:0008964(PANTHER)|GO:0008964(InterPro)|GO:0009507(PANTHER)|GO:0015977(InterPro)|GO:0048046(PANTHER)|GO:0048366(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Artr3g11455 K01595 phosphoenolpyruvate carboxylase [EC:4.1.1.31]
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Event-related genes

Select Gene_1 Gene_2 Event_name
21901 Artr1g01736 Artr3g11455
22422 Artr2g04477 Artr3g11455
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Artr Artr-Chr1:255875888 Artr3g11455 Artr-Chr3:387322888 transposed
Artr Artr-Chr1:292713294 Artr3g11455 Artr-Chr3:387322888 transposed
Artr Artr-Chr2:141537876 Artr3g11455 Artr-Chr3:387322888 transposed
Artr Artr-Chr5:69765604 Artr3g11455 Artr-Chr3:387322888 transposed
Artr Artr-Chr5:236637990 Artr3g11455 Artr-Chr3:387322888 transposed
Artr Artr-Chr7:384241403 Artr3g11455 Artr-Chr3:387322888 transposed
Artr Artr-Chr8:87666568 Artr3g11455 Artr-Chr3:387322888 transposed
Artr Artr-Chr1:50305253 Artr3g11455 Artr-Chr3:387322888 wgd