AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Artr3g11470 ATGATACAAGTAGCTATGGCTACTTCTTCGCTCTCGTTAATTCTCTTATGTTTGTTCATATCATTCTCAATATCAAATGCCATTGTTCCTTCGGCTGACACCTTCCGATATGTCAACGAAGGTGATTTTACAGACCAAAATGACTCTGAATACGTCCCAAACTCTGAATACACCACAACCTATCGTAACCTTGATCTATTTACCTTCCCTTTTCGACTTGTTTTCTACAACACCACCCCAAATGCCTATTATCTTGGTCTTCGTATGGGGAACAGACGTGATGAATCTCTCATGCGATGGGTCTGGGAAGCCAACCGTGGCATCCCAGTACGAGAAAATGCCACGTTTTCATTAGGTTCTGATGGGAACCTAATTTTGGCCGAATCAACCGGCCAAATTGTATGGCAAACCAATACCGCCAATAAAGGCGTCGTTGGTTTTGTCATAGAGTCAGATGGTAACATCGTGCTGAAAGACTCAAGTGGCAACTTCGTATGGCAGAGTTTTGACTCACCTACCGACACTCTCTTGGTAGGCCAAACTTTACGAGTTAACGGAGGCCCTTTCAAGCTCGTGAGTAGGGATTCGATCGCTAACAACGTTAACGGAGCATATAGTTTCGTAATAGAGCCTAAAAGACTGGCTTTGTATTATAAGAACAGCATGCGTTATTGGTCATCCACCTTCCCTGAATTAAACCGAGCAAATGTGACTTTAGTTAATGCAACGTTACGCATTGCAGAAGCCGAGTATGAAGAGAACAATTTTCACGTACTTCAGTGTCGTTTAGAGAACGCTCGAGACTTTGAACAACCGAATTTGTCTTTTGGAAGGATTCGATACAATAGCTCGTTATCGTATCTTCGACTAGGCATCGATGGGAACCTAAGACTCTACACTTATCGTAGAGGTGTGCGGGGAGACGCGTGGGCGTTATTGTTCACTTTGTTTGATGGAGGTGTAAAAACCAGTAGGGCGGCAGATGATCCAGTAGATGAATGTCAGTTACCAAGTCGATGCGGAAAATTTGGGCTTTGCGAGGAAAGCCAATGTGTTGGGTGCCCAACGCCAAACGGGGTGTTTGCGTGGAGCAAAGATTGCGATGTGAAGTTGCCTAGCTGTAATGCGAGCAGTTTCAAATATTACGAGCTTAAAGGGGTTGATCATTTCACTGTGAAGTATACATCCGGGACTGAATCTAACTTGGATAGTTGCAAGAACAAATGCACGAAGGATTGTAAGTGTATGGGGTATTTTTATCACACCGATCGGTCGAAGTGTTGGACAGTTAACGAGCTGAAGACGTTGACAAGAACCGGGAACTCGACATATTTGGCGTACATCAAAACGCCCGTAAGCTAG 1362 44.2 MIQVAMATSSLSLILLCLFISFSISNAIVPSADTFRYVNEGDFTDQNDSEYVPNSEYTTTYRNLDLFTFPFRLVFYNTTPNAYYLGLRMGNRRDESLMRWVWEANRGIPVRENATFSLGSDGNLILAESTGQIVWQTNTANKGVVGFVIESDGNIVLKDSSGNFVWQSFDSPTDTLLVGQTLRVNGGPFKLVSRDSIANNVNGAYSFVIEPKRLALYYKNSMRYWSSTFPELNRANVTLVNATLRIAEAEYEENNFHVLQCRLENARDFEQPNLSFGRIRYNSSLSYLRLGIDGNLRLYTYRRGVRGDAWALLFTLFDGGVKTSRAADDPVDECQLPSRCGKFGLCEESQCVGCPTPNGVFAWSKDCDVKLPSCNASSFKYYELKGVDHFTVKYTSGTESNLDSCKNKCTKDCKCMGYFYHTDRSKCWTVNELKTLTRTGNSTYLAYIKTPVS* 454
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Artr3g11470 453 SMART blect-4 55 172 IPR001480 -
Artr3g11470 453 PIRSF SLG 3 453 IPR035446 -
Artr3g11470 453 Pfam D-mannose binding lectin 101 185 IPR001480 -
Artr3g11470 453 SUPERFAMILY alpha-D-mannose-specific plant lectins 96 227 IPR036426 -
Artr3g11470 453 Gene3D - 41 171 IPR036426 -
Artr3g11470 453 ProSiteProfiles Bulb-type lectin domain profile. 49 170 IPR001480 -
Artr3g11470 453 CDD B-lectin 55 172 IPR001480 -
Artr3g11470 453 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE-THREONINE-PROTEIN KINASE SD2-5 52 450 IPR051343 -
Artr3g11470 453 CDD PAN-AP-plant 373 451 - -
Artr3g11470 453 ProSiteProfiles PAN-Apple domain profile. 374 449 IPR003609 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Artr3g11470 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Artr Artr-Chr3:388262210 Artr3g11486 Artr-Chr3:388696875 dispersed
Artr Artr-Chr3:388262210 Artr3g11477 Artr-Chr3:388432463 proximal