Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Artr3g11477 | ATGGCTTCTTCACAGCATTCTATCTATACAACTTTAGCTATATTTTTGTTATGCTTCCAACTACTTTCATTCAATTCTGAAGCCGTTGTACCGGCTTCAGACACATTTACCTACGTAAATGAAGGTGATTTCGGCGACTATATCGTTGAATATGATGCAAACTATCGTGCACTTTCCCCTTTTAATAACCCATTCCAACTTTGTTTCTACAACACCACCCCTAATGCATTCACTCTAGCTCTACGCATGGGCACGGTTCGATCAGAATCAGTCATGCGTTGGGTATGGGAAGCTAACCGTGGCAAGCCAGTTCGTGAAAATGCCACATTTTCACTCGGTACAAATGGAAACCTTGTCTTAGCAGATGCTGATGGTAGTGTTGTCTGGCAAACGAATACCGCCAACAAAGGTGTGATTGGTTTTCAAGTGCTTCCAAATGGTAACATGGTTTTACATGATGGAAAGGGTAATTTCATATGGCAAAGCTTTGATTCGCCTACGGATACTATCTTGGTGGGTCAGTCTCTTCGAGCTGGTGGTGCTAATAAGCTTGTAAGTCGAGCTTCTGAGGTGAACAATCTTGATGGGGCTTATAGTTTGGTGATGGAGCCCAAAGGGCTATCCATGTATTACAAGAGTCCTAATTCGCCACGTCCAATTTTGTACTGGACCTCTAGCGAATGGTTCACTATTGACAAGGGTACTTTGACAAATCTAACTCTTACTTCGGTTCCTGATACCGATGAAGGGTTTTTATATTATCTGACGTTTATTTACTTTGTCACAAACCCTTCATCGGATTCAAATAGAAACATGGCCTATTCGCGATACAACAACACATTGTCGTACCTTAGACTAGGGATAGATGGAAACCTTAGATTTTACACTTATAACCCGAATGTGCAAGGTGTTGCATGGGAATTGGTTTACACGTTTCTCGATAGGGATTCTATGGAAAAAGAGTGTCAATTACCTGAAAGATGTGGTAAGTTCGGGCTATGTGAGGATAGCCAGTGTGTGGCGTGCCCTACACCGAATGGGCTGACCGGGTGGAGCAAAGATTGTGATGTGAAAAAGGTGACATCTTGCAAAACTACTGACTTTAAGTATTACAAACTTGAAGGTGTTGATCATTTTATGATCAAGTACACTAGGGGCGATGGGGCAACCAAGCAAAGTGATTGCGAGAGCAAGTGCACAAGGGATTGCAAGTGTATGGGGTATTTCTATCACACGGATCAATCGAGGTGTTGGATTGCTTACGATTTGAAAACATTGACACGAGTTGGGAACTCAACTCACTTGGCGTACATCAAAACACCTAACAAGTCGTAA | 1335 | 42.4 | MASSQHSIYTTLAIFLLCFQLLSFNSEAVVPASDTFTYVNEGDFGDYIVEYDANYRALSPFNNPFQLCFYNTTPNAFTLALRMGTVRSESVMRWVWEANRGKPVRENATFSLGTNGNLVLADADGSVVWQTNTANKGVIGFQVLPNGNMVLHDGKGNFIWQSFDSPTDTILVGQSLRAGGANKLVSRASEVNNLDGAYSLVMEPKGLSMYYKSPNSPRPILYWTSSEWFTIDKGTLTNLTLTSVPDTDEGFLYYLTFIYFVTNPSSDSNRNMAYSRYNNTLSYLRLGIDGNLRFYTYNPNVQGVAWELVYTFLDRDSMEKECQLPERCGKFGLCEDSQCVACPTPNGLTGWSKDCDVKKVTSCKTTDFKYYKLEGVDHFMIKYTRGDGATKQSDCESKCTRDCKCMGYFYHTDQSRCWIAYDLKTLTRVGNSTHLAYIKTPNKS* | 445 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Artr3g11477 | 444 | ProSiteProfiles | PAN-Apple domain profile. | 363 | 441 | IPR003609 | - | |
| Artr3g11477 | 444 | SMART | blect-4 | 49 | 166 | IPR001480 | - | |
| Artr3g11477 | 444 | Pfam | D-mannose binding lectin | 95 | 178 | IPR001480 | - | |
| Artr3g11477 | 444 | CDD | PAN-AP-plant | 362 | 441 | - | - | |
| Artr3g11477 | 444 | Gene3D | - | 34 | 164 | IPR036426 | - | |
| Artr3g11477 | 444 | ProSiteProfiles | Bulb-type lectin domain profile. | 33 | 164 | IPR001480 | - | |
| Artr3g11477 | 444 | CDD | B-lectin | 49 | 166 | IPR001480 | - | |
| Artr3g11477 | 444 | PANTHER | G-TYPE LECTIN S-RECEPTOR-LIKE SERINE-THREONINE-PROTEIN KINASE SD2-5 | 56 | 441 | IPR051343 | - | |
| Artr3g11477 | 444 | SUPERFAMILY | alpha-D-mannose-specific plant lectins | 74 | 214 | IPR036426 | - | |
| Artr3g11477 | 444 | Pfam | S-locus glycoprotein domain | 234 | 347 | IPR000858 | GO:0048544(InterPro) | |
| Artr3g11477 | 444 | PIRSF | SLG | 1 | 444 | IPR035446 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Artr3g11477 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Artr | Artr-Chr3:388432463 | Artr8g00349 | Artr-Chr8:13941717 | dispersed | |
| Artr | Artr-Chr3:388262210 | Artr3g11477 | Artr-Chr3:388432463 | proximal | |
| Artr | Artr-Chr3:388432463 | Artr3g11480 | Artr-Chr3:388600743 | proximal |