AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Artr3g11477 ATGGCTTCTTCACAGCATTCTATCTATACAACTTTAGCTATATTTTTGTTATGCTTCCAACTACTTTCATTCAATTCTGAAGCCGTTGTACCGGCTTCAGACACATTTACCTACGTAAATGAAGGTGATTTCGGCGACTATATCGTTGAATATGATGCAAACTATCGTGCACTTTCCCCTTTTAATAACCCATTCCAACTTTGTTTCTACAACACCACCCCTAATGCATTCACTCTAGCTCTACGCATGGGCACGGTTCGATCAGAATCAGTCATGCGTTGGGTATGGGAAGCTAACCGTGGCAAGCCAGTTCGTGAAAATGCCACATTTTCACTCGGTACAAATGGAAACCTTGTCTTAGCAGATGCTGATGGTAGTGTTGTCTGGCAAACGAATACCGCCAACAAAGGTGTGATTGGTTTTCAAGTGCTTCCAAATGGTAACATGGTTTTACATGATGGAAAGGGTAATTTCATATGGCAAAGCTTTGATTCGCCTACGGATACTATCTTGGTGGGTCAGTCTCTTCGAGCTGGTGGTGCTAATAAGCTTGTAAGTCGAGCTTCTGAGGTGAACAATCTTGATGGGGCTTATAGTTTGGTGATGGAGCCCAAAGGGCTATCCATGTATTACAAGAGTCCTAATTCGCCACGTCCAATTTTGTACTGGACCTCTAGCGAATGGTTCACTATTGACAAGGGTACTTTGACAAATCTAACTCTTACTTCGGTTCCTGATACCGATGAAGGGTTTTTATATTATCTGACGTTTATTTACTTTGTCACAAACCCTTCATCGGATTCAAATAGAAACATGGCCTATTCGCGATACAACAACACATTGTCGTACCTTAGACTAGGGATAGATGGAAACCTTAGATTTTACACTTATAACCCGAATGTGCAAGGTGTTGCATGGGAATTGGTTTACACGTTTCTCGATAGGGATTCTATGGAAAAAGAGTGTCAATTACCTGAAAGATGTGGTAAGTTCGGGCTATGTGAGGATAGCCAGTGTGTGGCGTGCCCTACACCGAATGGGCTGACCGGGTGGAGCAAAGATTGTGATGTGAAAAAGGTGACATCTTGCAAAACTACTGACTTTAAGTATTACAAACTTGAAGGTGTTGATCATTTTATGATCAAGTACACTAGGGGCGATGGGGCAACCAAGCAAAGTGATTGCGAGAGCAAGTGCACAAGGGATTGCAAGTGTATGGGGTATTTCTATCACACGGATCAATCGAGGTGTTGGATTGCTTACGATTTGAAAACATTGACACGAGTTGGGAACTCAACTCACTTGGCGTACATCAAAACACCTAACAAGTCGTAA 1335 42.4 MASSQHSIYTTLAIFLLCFQLLSFNSEAVVPASDTFTYVNEGDFGDYIVEYDANYRALSPFNNPFQLCFYNTTPNAFTLALRMGTVRSESVMRWVWEANRGKPVRENATFSLGTNGNLVLADADGSVVWQTNTANKGVIGFQVLPNGNMVLHDGKGNFIWQSFDSPTDTILVGQSLRAGGANKLVSRASEVNNLDGAYSLVMEPKGLSMYYKSPNSPRPILYWTSSEWFTIDKGTLTNLTLTSVPDTDEGFLYYLTFIYFVTNPSSDSNRNMAYSRYNNTLSYLRLGIDGNLRFYTYNPNVQGVAWELVYTFLDRDSMEKECQLPERCGKFGLCEDSQCVACPTPNGLTGWSKDCDVKKVTSCKTTDFKYYKLEGVDHFMIKYTRGDGATKQSDCESKCTRDCKCMGYFYHTDQSRCWIAYDLKTLTRVGNSTHLAYIKTPNKS* 445
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Artr3g11477 444 ProSiteProfiles PAN-Apple domain profile. 363 441 IPR003609 -
Artr3g11477 444 SMART blect-4 49 166 IPR001480 -
Artr3g11477 444 Pfam D-mannose binding lectin 95 178 IPR001480 -
Artr3g11477 444 CDD PAN-AP-plant 362 441 - -
Artr3g11477 444 Gene3D - 34 164 IPR036426 -
Artr3g11477 444 ProSiteProfiles Bulb-type lectin domain profile. 33 164 IPR001480 -
Artr3g11477 444 CDD B-lectin 49 166 IPR001480 -
Artr3g11477 444 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE-THREONINE-PROTEIN KINASE SD2-5 56 441 IPR051343 -
Artr3g11477 444 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 214 IPR036426 -
Artr3g11477 444 Pfam S-locus glycoprotein domain 234 347 IPR000858 GO:0048544(InterPro)
Artr3g11477 444 PIRSF SLG 1 444 IPR035446 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Artr3g11477 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Artr Artr-Chr3:388432463 Artr8g00349 Artr-Chr8:13941717 dispersed
Artr Artr-Chr3:388262210 Artr3g11477 Artr-Chr3:388432463 proximal
Artr Artr-Chr3:388432463 Artr3g11480 Artr-Chr3:388600743 proximal