AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Artr3g11536 ATGTCTCGTCACATATACATCCCAATATTAATATCTACTTTACTTTCATTTACTTCCGCTAGAACTGTATTTAATGAGTCAACGCCAATATTGTTGCTACCATCATCATCATCATCTGTTGTTGTTGGTGAAATGAGTGGCGCGTGTCCATCACCTGATTCTAGACTCAACTACCGTCCGATAATTGGGATAGTGAGTCATCCAGGTGATGGTGCATCGGGTAGGCTTAGTAATGCTACCAATGCCTCGTATATTGCGGCTTCCTATGTTAAGTTTGTGGAGTCTGCTGGTGCTAGAGTTATTCCGATTATTTATAATGAACCAATGGAGATTATACAAACAGTAATTTCTTCTATGATAAATCTACTTGGCAGTCATTTATTGGTTTGTGAAAAAAAACTCAATTTAGTCAACGGAGTGCTTTTTACAGGTGGATGGTCTAAGACTGGCCTCTACTTTGATGTCATTGAGGAAGTTTTTAATCAAGTCCTGAAGAAGAATGACGCTGGTGAACATTTTCCGTTGCTTGCTATATGCTTAGGTTTTGAACTCGTAACAATGATTGTTAGCAAAAACAATAACATCCTTGAAGCCTTTAGTGCATCAGATCAAGCATCCACACTGCAATTCATAGATAACATTAATATTGAAGAAACTTTGTTTCAAAGATTTCCTCCCGAGTTGGTTGCCAAGTTGAGCACAGAATGCCTTGTGATGCAAAACCATAAATACGGAATATCGCCTGAAACATTTCAAAAGACCAAGGAACTATGCAGTTTCTTTAAGGTCTTAACAACTAGTACCGACGAAAATAACAAGGTATATGTATCAACAGCTCAATCCGAGAGGTATCCCGTGACTGCTGTCCAGTGGCATCCAGAGAAAAATGCTTTTGAGTGGGGCTCGTCGGTGATTCCACATTCAGATAATGCAATTCAGGTGACTCAACATGTTGCAAACTATTTCGTGAGCGAGGCTAGGAAATCCTTCAACAGACCACCTAATGACGAAGTGCTAAGAAACCTTATTTACAATTACAGCCCCACTTATTGTGGGACGGCTGGGAAAGGATACGATGAGGTTTATATCTTCAACGAGAATGAAAAGATGGCTCGACTTTAA 1122 39.57 MSRHIYIPILISTLLSFTSARTVFNESTPILLLPSSSSSVVVGEMSGACPSPDSRLNYRPIIGIVSHPGDGASGRLSNATNASYIAASYVKFVESAGARVIPIIYNEPMEIIQTVISSMINLLGSHLLVCEKKLNLVNGVLFTGGWSKTGLYFDVIEEVFNQVLKKNDAGEHFPLLAICLGFELVTMIVSKNNNILEAFSASDQASTLQFIDNINIEETLFQRFPPELVAKLSTECLVMQNHKYGISPETFQKTKELCSFFKVLTTSTDENNKVYVSTAQSERYPVTAVQWHPEKNAFEWGSSVIPHSDNAIQVTQHVANYFVSEARKSFNRPPNDEVLRNLIYNYSPTYCGTAGKGYDEVYIFNENEKMARL* 374
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Artr3g11536 373 Gene3D - 56 365 IPR029062 -
Artr3g11536 373 ProSiteProfiles Gamma-glutamyl hydrolase domain profile. 51 365 IPR015527 GO:0008242(InterPro)
Artr3g11536 373 Pfam Peptidase C26 60 294 IPR011697 GO:0016787(InterPro)
Artr3g11536 373 FunFam Folate gamma-glutamyl hydrolase 125 365 - -
Artr3g11536 373 PANTHER PROTEASE FAMILY C26 GAMMA-GLUTAMYL HYDROLASE 32 365 IPR015527 GO:0005773(PANTHER)|GO:0008242(InterPro)|GO:0034722(PANTHER)|GO:0046900(PANTHER)
Artr3g11536 373 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 101 332 - -
Artr3g11536 373 SUPERFAMILY Class I glutamine amidotransferase-like 81 364 IPR029062 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Artr3g11536 K01307 gamma-glutamyl hydrolase [EC:3.4.19.9]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Artr Artr-Chr1:52602507 Artr3g11536 Artr-Chr3:390350369 dispersed