AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Artr3g11568 ATGAGGTGCAATGCGTGCTGGCGGGAGCTGGAAGGACGGGCTATAACTACCACATGTGGCCATCTCTTATGCAATGAAGATGCCAGTAAGATATTAAGCAACGATGCAGCTTGCCCTATTTGTGATCAAGTACTTTCTAAAAGTCTTATGAAACCTGTGGATACAAACCCAAGTGACGAATGGGTTAATATGGCTATGACTGGATTATCTCCACAGCTACTAATGAAGAGTGCATATAGAAGCGTCATGTTCACCATTGGACAGAAGGAACTAGAAATGCAATTCAAGATGAACAGGATAGTAGCTCAGTGCCGGCAGAAATGTGAGGCGCTGCAAGAAAAGTTCACAGAAAAAATGGAGCAGGTGCATACCGCATATCAGAAAATGGGCAAAAGGTGCCAGATGATGGAACAAGAAATTGAAAACTTGTCTAAAGATAAGCAGGAGCTCCAAGAAAAATATTCTGAAAAGTCCAGGCAGAAGAGAAAACTGGACGAGATGTATGACCAATTGAGAAGTGAGTATGAGTCGGTCAAACGGTCAGCCATTCAACCTGCAAACAACTTCTTCTCAAGGGCAGAACCTGATTTGTTTCCCAGTCCAGCCAACATGATGGATAACAGAGATACCACAAGGAAAGATTGGTCGGTTTTCACCCCTGATACTCCAGGACCTCGTGAAGATATATGGCCACACACAACTAGACAGAACAGTTCGAACTCTGGGCCATTCGACATCACCAATAGCCCACCTGCTAAACATTCAGCAATCCCAGTTGAAAGCAGAAGACCAGCTGGTCGTCCAATGTTTGGAGGTGGAGGTGGAGGTGGAGGTGGTGGTGGTGGAGCAAGCAATCCTTCTATGACCCTAAGAAATCTTATATTATCACCAATGAAGAAGCCTCAACTCTCACGTAGCAGACCTCAACTGTTCACGTTGTAG 942 44.9 MRCNACWRELEGRAITTTCGHLLCNEDASKILSNDAACPICDQVLSKSLMKPVDTNPSDEWVNMAMTGLSPQLLMKSAYRSVMFTIGQKELEMQFKMNRIVAQCRQKCEALQEKFTEKMEQVHTAYQKMGKRCQMMEQEIENLSKDKQELQEKYSEKSRQKRKLDEMYDQLRSEYESVKRSAIQPANNFFSRAEPDLFPSPANMMDNRDTTRKDWSVFTPDTPGPREDIWPHTTRQNSSNSGPFDITNSPPAKHSAIPVESRRPAGRPMFGGGGGGGGGGGGASNPSMTLRNLILSPMKKPQLSRSRPQLFTL* 314
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Artr3g11568 313 ProSiteProfiles Zinc finger RING-type profile. 3 42 IPR001841 -
Artr3g11568 313 Pfam zinc-RING finger domain 2 43 IPR001841 -
Artr3g11568 313 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CCNB1IP1 HOMOLOG 1 313 - GO:0051026(PANTHER)
Artr3g11568 313 FunFam E3 ubiquitin-protein ligase CCNB1IP1 homolog 1 53 - -
Artr3g11568 313 Coils Coil 126 181 - -
Artr3g11568 313 MobiDBLite consensus disorder prediction 231 248 - -
Artr3g11568 313 MobiDBLite consensus disorder prediction 213 289 - -
Artr3g11568 313 Coils Coil 101 121 - -
Artr3g11568 313 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 1 67 IPR013083 -
Artr3g11568 313 SUPERFAMILY RING-U-box 2 50 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Artr3g11568 K10639 E3 ubiquitin-protein ligase CCNP1IP1 [EC:2.3.2.27]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Artr Artr-Chr3:391514421 Artr6g08669 Artr-Chr6:297256022 dispersed