AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Artr3g11771 ATGGCAGCAGCAGCAACAGTTGGAGCATTAAAACCACCACATTTCATCACCTCCTCATCATCTGACAAAAAAACCAACCTCCTCCGTTCATCCTTATCATTCTCCTCATCACTCTGTGAAAAAATATCTTCATCCGTACAACCACGTCGTAGTAGTTTTAGTAATAGTAGTAGAGCTCCGTTAGTTGTTTGTCCGAAATCAGTTTCGGATTCTAAGAATTCGCAGACATGTCTTGATCCTGACGCCAGCCAAAGTGTTTTGGGTATAATACTTGGAGGTGGAGCGGGGACTCGTCTCTACCCTTTAACAAAGAAGAGAGCGAAGCCTGCTGTTCCTTTGGGAGCAAACTATCGACTTATTGACATTCCTGTTAGCAATTGCTTGAATAGCAACATTTCAAAGATTTACGTTCTTACACAGTTCAACTCTGCTTCACTTAATCGTCACCTTTCACGGGCTTATGCAAGTAACATGGGTGGTTATAAGAACGAAGGGTTTGTTGAAGTCCTTGCCGCTCAACAAAGTCCCGAGAATCCAAACTGGTTTCAGGGTACTGCCGATGCTGTAAGGCAGTATTTGTGGCTGTTTGAAGAGCATAATGTTCTAGAGTTCCTTATCCTTGCTGGTGATCACTTATATCGTATGGATTACGAGAAGTTTATTCAAGCTCACAGAGAAACAGATGCTGATATCACTGTAGCAGCTCTACCAATGGATGAAAAGCGTGCAACTGCATTTGGTCTCATGAAGATTGATGAAGAAGGGCGTATAATTGAATTTGCAGAGAAACCAAAAGGAGAGCAACTGAAAGCTATGAAAGTTGATACTACAATTTTAGGACTTGATGAAGAGAGAGCTAAAGAGATGCCTTATATTGCTAGTATGGGTATATATGTTGTCAGCAAAGATGTAATGTTGAATTTGCTGCGAGATAAGTTTCCCGGAGCAAATGATTTTGGAAGTGAAGTAATTCCTGGAGCAACTTCTATTGGGCTAAGAGTACAAGCTTATCTTTATGATGGTTACTGGGAAGATATTGGTACCATTGAGGCTTTCTATAATGCCAATTTGGGAATTACAAAGAAACCAGTGCCAGATTTCAGTTTCTACGATCGTTCATCTCCTATTTACACCCAACCTCGATATTTGCCTCCTTCCAAGATGCTTGACGCTGATGTCACAGATAGTGTTATTGGTGAAGGGTGTGTGATTAAGAACTGCAAAATTCATCATTCTGTTGTTGGACTTCGATCTTGCATAGCTGAAGGTGCAGTCATTGAAGATTCATTGCTGATGGGAGCAGATTATTATGAGACTGATGCTGACAGGGAGCTTCTTGCTGCAAAAGGTAGTGTTCCGATTGGTATTGGGAAGAACACTCACATCAAAAGAGCAATCATTGACAAGAATGCACGCATAGGAGACAATGTGAAGATTATAAACAGTGATAACGTTCAAGAAGCAGCAAGGGAAACAGAAGGGTACTTCATAAAAAGCGGAATCGTGACGGTCATCAAAGACGCGTTGATTCCTTCTGGCAGCATAATCTAG 1551 41.33 MAAAATVGALKPPHFITSSSSDKKTNLLRSSLSFSSSLCEKISSSVQPRRSSFSNSSRAPLVVCPKSVSDSKNSQTCLDPDASQSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPKGEQLKAMKVDTTILGLDEERAKEMPYIASMGIYVVSKDVMLNLLRDKFPGANDFGSEVIPGATSIGLRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSSPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCIAEGAVIEDSLLMGADYYETDADRELLAAKGSVPIGIGKNTHIKRAIIDKNARIGDNVKIINSDNVQEAARETEGYFIKSGIVTVIKDALIPSGSII* 517
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Artr3g11771 516 FunFam Glucose-1-phosphate adenylyltransferase 67 381 - -
Artr3g11771 516 FunFam Glucose-1-phosphate adenylyltransferase 382 516 - -
Artr3g11771 516 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 66 381 IPR029044 -
Artr3g11771 516 SUPERFAMILY Trimeric LpxA-like enzymes 379 516 IPR011004 -
Artr3g11771 516 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 181 189 IPR005836 GO:0005978(InterPro)|GO:0008878(InterPro)
Artr3g11771 516 Gene3D Hexapeptide repeat proteins 382 516 - -
Artr3g11771 516 SUPERFAMILY Nucleotide-diphospho-sugar transferases 85 477 IPR029044 -
Artr3g11771 516 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 47 516 IPR011831 GO:0005978(InterPro)|GO:0008878(InterPro)
Artr3g11771 516 NCBIfam glucose-1-phosphate adenylyltransferase 86 480 IPR011831 GO:0005978(InterPro)|GO:0008878(InterPro)
Artr3g11771 516 Pfam Nucleotidyl transferase 88 361 IPR005835 GO:0009058(InterPro)
Artr3g11771 516 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 92 111 IPR005836 GO:0005978(InterPro)|GO:0008878(InterPro)
Artr3g11771 516 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 293 303 IPR005836 GO:0005978(InterPro)|GO:0008878(InterPro)
Artr3g11771 516 CDD LbH-G1P-AT-C 384 510 - -
Artr3g11771 516 CDD ADP-Glucose-PP 97 346 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Artr3g11771 K00975 glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Artr Artr-Chr2:414548766 Artr3g11771 Artr-Chr3:402446758 dispersed
Artr Artr-Chr3:402446758 Artr4g06353 Artr-Chr4:217766044 dispersed