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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Artr3g11817 ATGGGGTGCCAGTGTGATCATTGTGGGGAAGCAAGATCGATGGTGTATTGTCGATCAGATGCAGCCTACTTATGTTTATCATGCGATCGTCTTGTTCATTCTGCAAATGCAATATCAAAACGCCATTCAAGAACACTTGTATGTGATAAGTGCAAGTCACAACCCGCGGTTATTAGATGCATAGAAGAAAAAGTATCTCTTTGTCAAAATTGTGATTGGGATGGTCATAATGGTTCAAGCACACATAGTCGACAAACTTTAAATTGCTACTCGGGTTGCCCTTCGGCTGAAGAACTTTCTTCTATCTGGTCGTTTATGTCAGAGTCGATTTCTGTTATTGATTCTACTTGTGAGCAAGGAATGGGTTCAATGTGCATTGCTGATAATAGGCAAGGACCCTCTACAAGCAATAAGAATCAAGATTTGGTTGTCACTAGTGCAACGAAAGGTTTACAAAGTGAAAATAATCCAAATGTTTGGATGGGTCCTTCAAGTAGTCGTGTGGGTAATAGGCCTCCAAATGTAGTTCAAGACGCTGGACCCGTAGCTTCTTCTTCATCAAAGGTATCACATTCAGGGACAAAAGATCTTGAACAATTTGTTGATGATGATGGATTCTACGTTGACTTTAATATGGATGAAGTTGACTTAAGCATTGAGAATTATGAAGTACTCTTTGGCGTAGGCCATAACGATCCCGAACATCTTTTCGCAAAAGATGGGATTGATAGTTTGTTTGGTGGTGCCGAATCTTCATACGCTGCCAAGGAGTCTTCAACAGGAATGGGAAATCCAGCACAACCAGCATGCAGTAATGCAGCATCAGCTGACTCATTAATAAGCTGCAAAACGGAACCAACCCGCTATGGAAGGCAACACTCGAATATCTCGTTCTCAAGTCTAACCGGTGAGAGCACTGCTGCTGATTATCAAGACTGTGGAGCTTCTTCAATGCTTCTTATGGCTGAACCACCATGGGTCCCCACAGGTCCTGACCAAAGCGCCACGCCAATTGGTAACAGAAGTGATGCTGTCCTCCGTTACAAAGAAAAAAAGAAGACACGCAAATTTGATAAGAGAGTAAGGTATGCTACACGAAAGGAACGAGCTGATGTAAGAAAGCGTGTGAAAGGGCGGTTTGTGAAGGCTGGTGATGCTTATGATTATGACCCCATGAGTCAAACACGAAGCTTCTAA 1197 42.69 MGCQCDHCGEARSMVYCRSDAAYLCLSCDRLVHSANAISKRHSRTLVCDKCKSQPAVIRCIEEKVSLCQNCDWDGHNGSSTHSRQTLNCYSGCPSAEELSSIWSFMSESISVIDSTCEQGMGSMCIADNRQGPSTSNKNQDLVVTSATKGLQSENNPNVWMGPSSSRVGNRPPNVVQDAGPVASSSSKVSHSGTKDLEQFVDDDGFYVDFNMDEVDLSIENYEVLFGVGHNDPEHLFAKDGIDSLFGGAESSYAAKESSTGMGNPAQPACSNAASADSLISCKTEPTRYGRQHSNISFSSLTGESTAADYQDCGASSMLLMAEPPWVPTGPDQSATPIGNRSDAVLRYKEKKKTRKFDKRVRYATRKERADVRKRVKGRFVKAGDAYDYDPMSQTRSF* 399
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Artr3g11817 398 ProSiteProfiles Zinc finger B-box type profile. 43 87 IPR000315 GO:0008270(InterPro)
Artr3g11817 398 CDD Bbox1-BBX-like 47 87 IPR049808 -
Artr3g11817 398 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 5 387 - -
Artr3g11817 398 ProSiteProfiles Zinc finger B-box type profile. 5 47 IPR000315 GO:0008270(InterPro)
Artr3g11817 398 CDD Bbox1-BBX-like 5 47 IPR049808 -
Artr3g11817 398 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Artr3g11817 398 SMART bboxneu5 48 87 IPR000315 GO:0008270(InterPro)
Artr3g11817 398 Pfam CCT motif 341 383 IPR010402 GO:0005515(InterPro)
Artr3g11817 398 Pfam ANCHR-like B-box zinc-binding domain 47 79 - -
Artr3g11817 398 ProSiteProfiles CCT domain profile. 341 383 IPR010402 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Artr3g11817 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
21908 Artr1g01926 Artr3g11817
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Artr Artr-Chr1:56431634 Artr3g11817 Artr-Chr3:404825652 dispersed
Artr Artr-Chr2:155234228 Artr3g11817 Artr-Chr3:404825652 dispersed
Artr Artr-Chr3:404825652 Artr9g04872 Artr-Chr9:193776349 dispersed
Artr Artr-Chr3:404825652 Artr1g12386 Artr-Chr1:401586392 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Artr1g01483 . 1 105 C2C2-CO-like Transcription Factor family AT4G27310 52.381 1.73e-30 109.0
Artr1g01826 ACH 1 299 C2C2-CO-like Transcription Factor family AT1G78600 51.125 2.70e-94 279.0
Artr1g01926 ACH 1 373 C2C2-CO-like Transcription Factor family AT5G48250 53.708 4.65e-134 386.0
Artr1g04858 . 284 331 C2C2-CO-like Transcription Factor family AT5G57660 52.083 1.08e-09 56.6
Artr1g05583 . 1 183 C2C2-CO-like Transcription Factor family AT4G38960 60.094 2.97e-84 246.0
Artr1g05797 ACH 4 105 C2C2-CO-like Transcription Factor family AT5G54470 52.427 3.87e-30 108.0
Artr1g12088 . 78 319 C2C2-CO-like Transcription Factor family AT3G02380 29.236 5.63e-23 95.9
Artr1g12103 . 73 319 C2C2-CO-like Transcription Factor family AT3G02380 30.619 3.14e-23 96.7
Artr2g02760 . 7 77 C2C2-CO-like Transcription Factor family AT5G57660 64.789 2.88e-29 107.0
Artr2g04621 . 1 299 C2C2-CO-like Transcription Factor family AT1G78600 49.839 2.15e-91 271.0
Artr2g04871 . 1 367 C2C2-CO-like Transcription Factor family AT3G07650 54.987 4.11e-132 380.0
Artr3g06788 . 9 355 C2C2-CO-like Transcription Factor family AT5G57660 42.577 1.16e-73 230.0
Artr3g10700 . 252 330 C2C2-CO-like Transcription Factor family AT5G15850 35.443 4.33e-10 57.4
Artr3g11566 ACH 176 298 C2C2-CO-like Transcription Factor family AT1G78600 41.538 1.03e-17 75.5
Artr3g11817 ACH 1 373 C2C2-CO-like Transcription Factor family AT5G48250 53.398 6.00e-129 374.0
Artr4g04157 . 202 270 C2C2-CO-like Transcription Factor family AT2G24790 42.029 8.91e-11 58.5
Artr4g07884 ACH 338 383 C2C2-CO-like Transcription Factor family AT5G24930 56.522 3.28e-11 62.0
Artr4g12854 . 331 393 C2C2-CO-like Transcription Factor family AT5G24930 46.032 3.69e-12 65.5
Artr5g00840 . 3 272 C2C2-CO-like Transcription Factor family AT2G24790 46.926 1.72e-80 244.0
Artr5g03290 ACH 235 333 C2C2-CO-like Transcription Factor family AT5G15850 37.0 1.89e-12 65.5
Artr6g02856 . 1 202 C2C2-CO-like Transcription Factor family AT1G75540 50.718 1.73e-60 191.0
Artr6g05504 . 1 347 C2C2-CO-like Transcription Factor family AT3G02380 52.196 6.01e-117 342.0
Artr7g02881 . 270 386 C2C2-CO-like Transcription Factor family AT5G24930 35.246 6.17e-12 64.7
Artr7g08124 . 9 347 C2C2-CO-like Transcription Factor family AT3G02380 49.33 2.74e-116 340.0
Artr7g11442 . 284 331 C2C2-CO-like Transcription Factor family AT5G57660 52.083 2.85e-10 58.2
Artr8g09964 . 5 221 C2C2-CO-like Transcription Factor family AT3G21150 29.185 4.30e-18 78.2
Artr9g04555 . 287 399 C2C2-CO-like Transcription Factor family AT1G68520 41.481 6.89e-21 91.3
Artr9g04872 . 8 401 C2C2-CO-like Transcription Factor family AT2G33500 38.479 2.61e-73 234.0
Artr9g06433 ACH 4 97 C2C2-CO-like Transcription Factor family AT5G54470 55.789 7.21e-32 113.0
Artr9g06452 ACH 4 97 C2C2-CO-like Transcription Factor family AT5G54470 54.737 2.08e-31 112.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Artr CCT 5.4e-16 CL0281 TF C2C2-CO-like