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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Artr3g11836 ATGAAGGCTTTAAGATTTGGGGTTTATTGTGATCCCATAAACCCTCCTTCAACTTTCAAATCTTCATCATCATCAGCAATCTTAATGGATGGTCGCAAAAACAATCTTGCTTGTATTCGAGCTCAACAGTCTAAGACGAAAGACGTGCCTATAATTACTACTTCATCCAATGTATCCCTAATTGAAGAACTGAAAAGTAAAGATTGGGAAATTGGAGTTTTAAAAGATGAAATAGCTGCAACTCAGGGAATTCGAATAAGAAGACGACCTCCAACAGGACCTCCTTTGCATTATGTTGGTCCTTTGGAGCTCCTTTTACAGAATGAAGGGAATACTCCCCGTAACATACTTGAAGAAATTGTATGGAACAAAGATGTAGAGGTTACCCAGATGAAAGAGAGATATCCGCTATTTTCGCTAAAAGAGGCTCTCAACAGTGCTCCTCCTTCAAGGGACTTTGTAGGAGCTCTCAAGGCGTCATATTTGCGAACTGGAGTGCCTGGTTTAATTGCTGAAGTGAAAAAGGCTTCACCGAGTAGAGGAGTTCTAAGGGAAGATTTTCACCCTGTTGAAGTTGCAAAAGCATATGAGAAAGGTGGAGCAGCATGCCTCAGTGTTTTGACCGATTCAAAATATTTTCAGGGGAGCTTCGAGAATCTAGAGGCTATACGGAATGCTGGAGTCAAGTGCCCTCTCTTGTGCAAAGAGTTCATTGTGGATGCATGGCAGCTGTATTATGGGCGAGCAAAGGGTGCAGATGCTGTTTTGTTAATTGCAGGCGTCTTACCAGATCTTGACATCAAATACATGCTTAAGATTTGCAAAATGATTGGACTGACAGCACTTGTTGAGGTACATGATGAGAACGAAATGGATCGCATGCTGGCAATTGATGGCATTGAACTCATTGGCATCAACAACCGTAACCTTGAAACATTTGAAGTTGATATTAGTAACACAAAGAAGTTGCTTGAAGGGGAGCGTGGGGAGAAGATCAGACAGAAGGACATAATAGTGGTCGGGGAGTCTGGACTGTTTACTCCTGCAGATATTGCTTATGTACTAGAAGCTGGCGTGAAAGCTATATTGGTCGGGGAGTCAATTGTGAAGCAGAAAGATCCGACACAAGGAATTAGAGAACTTTTTGGAAAAGATATATCAGCTTAG 1167 41.82 MKALRFGVYCDPINPPSTFKSSSSSAILMDGRKNNLACIRAQQSKTKDVPIITTSSNVSLIEELKSKDWEIGVLKDEIAATQGIRIRRRPPTGPPLHYVGPLELLLQNEGNTPRNILEEIVWNKDVEVTQMKERYPLFSLKEALNSAPPSRDFVGALKASYLRTGVPGLIAEVKKASPSRGVLREDFHPVEVAKAYEKGGAACLSVLTDSKYFQGSFENLEAIRNAGVKCPLLCKEFIVDAWQLYYGRAKGADAVLLIAGVLPDLDIKYMLKICKMIGLTALVEVHDENEMDRMLAIDGIELIGINNRNLETFEVDISNTKKLLEGERGEKIRQKDIIVVGESGLFTPADIAYVLEAGVKAILVGESIVKQKDPTQGIRELFGKDISA* 389
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Artr3g11836 388 Gene3D Aldolase class I 109 387 IPR013785 -
Artr3g11836 388 SUPERFAMILY Ribulose-phoshate binding barrel 124 383 IPR011060 -
Artr3g11836 388 Pfam Indole-3-glycerol phosphate synthase 117 381 IPR013798 GO:0004425(InterPro)
Artr3g11836 388 CDD IGPS 153 381 IPR013798 GO:0004425(InterPro)
Artr3g11836 388 FunFam Indole-3-glycerol phosphate synthase chloroplastic 109 387 - -
Artr3g11836 388 Hamap Indole-3-glycerol phosphate synthase [trpC]. 115 383 IPR013798 GO:0004425(InterPro)
Artr3g11836 388 ProSitePatterns Indole-3-glycerol phosphate synthase signature. 169 187 IPR001468 GO:0004425(InterPro)|GO:0006568(InterPro)
Artr3g11836 388 PANTHER TRYPTOPHAN BIOSYNTHESIS PROTEIN 60 384 IPR045186 GO:0000162(PANTHER)|GO:0004425(PANTHER)|GO:0004425(InterPro)|GO:0004640(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Artr3g11836 K01609 indole-3-glycerol phosphate synthase [EC:4.1.1.48]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Artr Artr-Chr2:154819627 Artr3g11836 Artr-Chr3:405419220 dispersed