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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Artr3g11890 ATGGCAGATTCCGACAACGAGGCAGGTGGAGAGTTATCAGCAAGGGAACAAGACAGGTTCCTGCCGATAGCTAACGTGAGCAGGATCATGAAAAAAGCGTTACCAGCAAATGCCAAGATATCGAAAGATGCGAAAGAGACGGTGCAGGAATGTGTGTCGGAGTTTATTAGTTTTATAACAGGTGAAGCTTCGGATAAGTGTCAAAGGGAGAAAAGGAAGACCATTAATGGTGATGATTTGCTTTGGGCTATGACTACTTTAGGGTTTGAGGAGTATGTTGACCCTTTGAAGGTGTATTTAGCAAAATACAGAGAAATGGAAGGCGAAAAGACTATCGGACGACAAGGCGAGCATGATGGGTCATCCGGAGGCGGTGGTGGTGCGAATCCTGGTGGGTATAATGATGGTGGTGGGATGTATGGAGGGATGCAGAATAATATGGTGATGGGTAGGACACAACACCAAATGTATAACTCGAATTCGGGTTCGTATCAGCAAATGAGCTTGGGTAGTCCGAAAGGCGGTTTGGGCAGATCCGGCAGCTTTGGTGGCGGCTCTGGTGGAAGTTCTACTGTGAAGCCTAGGTAG 588 47.28 MADSDNEAGGELSAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVDPLKVYLAKYREMEGEKTIGRQGEHDGSSGGGGGANPGGYNDGGGMYGGMQNNMVMGRTQHQMYNSNSGSYQQMSLGSPKGGLGRSGSFGGGSGGSSTVKPR* 196
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Artr3g11890 195 Pfam Histone-like transcription factor (CBF-NF-Y) and archaeal histone 20 84 IPR003958 -
Artr3g11890 195 MobiDBLite consensus disorder prediction 146 172 - -
Artr3g11890 195 FunFam Nuclear transcription factor Y subunit B-3 9 129 - -
Artr3g11890 195 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 11 156 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Artr3g11890 195 PRINTS CCAAT-binding transcription factor subunit A signature 86 104 - -
Artr3g11890 195 PRINTS CCAAT-binding transcription factor subunit A signature 48 66 - -
Artr3g11890 195 PRINTS CCAAT-binding transcription factor subunit A signature 67 85 - -
Artr3g11890 195 ProSitePatterns NF-YB-HAP3 subunit signature. 51 67 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Artr3g11890 195 Gene3D Histone, subunit A 10 128 IPR009072 GO:0046982(InterPro)
Artr3g11890 195 MobiDBLite consensus disorder prediction 111 195 - -
Artr3g11890 195 SUPERFAMILY Histone-fold 17 116 IPR009072 GO:0046982(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Artr3g11890 K08065 nuclear transcription Y subunit beta
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Artr Artr-Chr3:407283916 Artr5g09378 Artr-Chr5:322692376 dispersed
Artr Artr-Chr1:458569027 Artr3g11890 Artr-Chr3:407283916 transposed
Artr Artr-Chr7:121980103 Artr3g11890 Artr-Chr3:407283916 transposed
Artr Artr-Chr2:154685324 Artr3g11890 Artr-Chr3:407283916 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Artr1g03516 . 1 97 CCAAT-HAP3 Transcription Factor family AT1G09030 73.469 1.09e-50 155.0
Artr1g14036 . 1 126 CCAAT-HAP3 Transcription Factor family AT4G14540 86.508 2.02e-76 224.0
Artr2g04856 . 1 124 CCAAT-HAP3 Transcription Factor family AT4G14540 83.871 4.83e-71 211.0
Artr2g07093 . 48 145 CCAAT-HAP3 Transcription Factor family AT2G47810 71.429 1.04e-51 159.0
Artr3g02182 . 1 148 CCAAT-HAP3 Transcription Factor family AT5G47670 67.114 3.70e-65 199.0
Artr3g11890 . 1 124 CCAAT-HAP3 Transcription Factor family AT4G14540 85.484 8.80e-73 215.0
Artr3g13355 . 1 201 CCAAT-HAP3 Transcription Factor family AT5G47670 59.804 5.86e-72 217.0
Artr4g06555 . 51 157 CCAAT-HAP3 Transcription Factor family AT2G47810 69.369 1.43e-54 167.0
Artr4g09871 ACH 1 173 CCAAT-HAP3 Transcription Factor family AT2G37060 73.889 1.25e-85 247.0
Artr5g00414 . 89 113 CCAAT-HAP3 Transcription Factor family AT2G38880 68.0 1.74e-06 41.2
Artr5g09378 ACH 1 173 CCAAT-HAP3 Transcription Factor family AT2G37060 75.978 3.84e-86 248.0
Artr6g08522 . 6 156 CCAAT-HAP3 Transcription Factor family AT2G37060 69.935 5.85e-73 215.0
Artr7g03164 . 35 215 CCAAT-HAP3 Transcription Factor family AT2G13570 60.638 4.94e-67 202.0
Artr7g04866 . 15 108 CCAAT-HAP3 Transcription Factor family AT4G14540 77.66 2.50e-51 160.0
Artr7g06257 . 74 149 CCAAT-HAP3 Transcription Factor family AT3G53340 72.368 7.75e-34 113.0
Artr7g06648 . 1 168 CCAAT-HAP3 Transcription Factor family AT2G37060 73.373 1.34e-82 239.0
Artr7g11199 . 1 168 CCAAT-HAP3 Transcription Factor family AT2G37060 73.295 1.21e-81 237.0
Artr8g02080 . 43 157 CCAAT-HAP3 Transcription Factor family AT2G47810 78.261 1.91e-62 189.0
Artr8g02082 . 43 157 CCAAT-HAP3 Transcription Factor family AT2G47810 76.522 2.72e-61 186.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Artr CBFD_NFYB_HMF 1.8e-27 CL0012 TF NF-YB