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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Artr3g11910 ATGGAAGAGTTTCTTAGAAGATGCTTTTACCATTCGGGTCAATACGGATCCGAGGAAAATTTTGCAGAATTAGACACTAAGCTAAAACAGAAAGAGGGCGGAAAACTGTCGAATAGGTTGTTTTACTTGTCAATACCTCCAGACATTTTTGTGGATGTGGTACGTTGTGCGAGTGAAAGAGCTTCTTCTAAAACTGGGTGGACACGGGTGATAGTCGAAAAACCATTTGGGCGTGACTCGGAATCGTCTGGAGAGCTAACAAGAAGCCTGAAGAAGTACTTAGCTGAGGATCAAATCTTTAGAATTGATCATTATTTGGGAAAGGAGCTCGTGGAGAATCTATCAGTTCTTCGTTTCTCAAATCTTGTTTTTGAACCACTTTGGTCAAGAAACTACATTCGCAGTGTACAATTCATATTTTCAGAAGACTTTGGTACAGAAGGACGAGGAGGTTACTTTAACAACTATGGAATCATTCGCGATATAATGCAAAACCACCTTCTGCAAATATTAGCATTATTTGCAATGGAAACACCCGTTAGTTTAGACGCCGAGGACATTAGAAATGAAAAGGTCAAAGTTTTGAGGTCAATGAGACAAATTAAACTCGAAGATGTAGTTGTCGGTCAATATAAGGGGCATAGCAAGGGGGGAAAGACGTTTTTAGGATACACAGAGGACCCGACTGTCCCAAACGATAGCATCACTCCAACTTTTGCAGCAGCAGCACTCTTTATTGATAATGCTCGGTGGGATGGTGTTCCTTTCCTCATGAAAGCTGGAAAGGCCCTGAATACTAGACGGGCGGAGATCAGAGTTCAGTTCAGACATGTTCCTGGTAACCTGTATAAACGAAACTTTGGGACAGATATGGACAAAGCTACAAACGAACTTGTGCTTCGTGTGCAGCCCAATGAAGCCATATTTCTTAAAATCAATAACAAGATCCCTGGTCTTGGTATGAGGCTCGACAGAAGTGACCTTAATTTGCTCTACAGTATGAGATATCCAAAGGAAATACCGGATGCATACGAGAGGCTTTTATTGGACGCGATAGAAGGAGAAAGGAGATTGTTTATAAGAAGTGATGAGCTTGATGCTGCGTGGTCTATATTTACCCCATTGTTGAAAGAACTTGAGTCTAAGAAGATTGCACCGGAGTTATATCCGTATGGTAGTAGAGGACCAGTTGGAGCTCATTATCTGGCTGCAAAATACAATGCCCGGTGGGGCGATCTTGCGGGAGATGACTAA 1254 42.11 MEEFLRRCFYHSGQYGSEENFAELDTKLKQKEGGKLSNRLFYLSIPPDIFVDVVRCASERASSKTGWTRVIVEKPFGRDSESSGELTRSLKKYLAEDQIFRIDHYLGKELVENLSVLRFSNLVFEPLWSRNYIRSVQFIFSEDFGTEGRGGYFNNYGIIRDIMQNHLLQILALFAMETPVSLDAEDIRNEKVKVLRSMRQIKLEDVVVGQYKGHSKGGKTFLGYTEDPTVPNDSITPTFAAAALFIDNARWDGVPFLMKAGKALNTRRAEIRVQFRHVPGNLYKRNFGTDMDKATNELVLRVQPNEAIFLKINNKIPGLGMRLDRSDLNLLYSMRYPKEIPDAYERLLLDAIEGERRLFIRSDELDAAWSIFTPLLKELESKKIAPELYPYGSRGPVGAHYLAAKYNARWGDLAGDD* 418
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Artr3g11910 417 NCBIfam glucose-6-phosphate dehydrogenase 1 411 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Artr3g11910 417 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 2 116 IPR036291 -
Artr3g11910 417 Pfam Glucose-6-phosphate dehydrogenase, NAD binding domain 1 113 IPR022674 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Artr3g11910 417 Hamap Glucose-6-phosphate 1-dehydrogenase [zwf]. 1 412 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Artr3g11910 417 PIRSF G6PD 1 414 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Artr3g11910 417 ProSitePatterns Glucose-6-phosphate dehydrogenase active site. 103 109 IPR019796 GO:0004345(InterPro)|GO:0006006(InterPro)
Artr3g11910 417 PRINTS Glucose-6-phosphate dehydrogenase signature 163 179 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Artr3g11910 417 PRINTS Glucose-6-phosphate dehydrogenase signature 93 121 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Artr3g11910 417 PRINTS Glucose-6-phosphate dehydrogenase signature 145 162 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Artr3g11910 417 PRINTS Glucose-6-phosphate dehydrogenase signature 69 82 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Artr3g11910 417 PRINTS Glucose-6-phosphate dehydrogenase signature 250 276 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Artr3g11910 417 Gene3D Dihydrodipicolinate Reductase; domain 2 102 411 - -
Artr3g11910 417 Gene3D - 1 101 - -
Artr3g11910 417 PANTHER GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD 1 409 IPR001282 GO:0004345(PANTHER)|GO:0006006(PANTHER)|GO:0006006(InterPro)|GO:0009051(PANTHER)|GO:0009570(PANTHER)|GO:0016614(InterPro)|GO:0050661(InterPro)
Artr3g11910 417 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 103 410 - -
Artr3g11910 417 FunFam Glucose-6-phosphate 1-dehydrogenase 102 411 - -
Artr3g11910 417 Pfam Glucose-6-phosphate dehydrogenase, C-terminal domain 116 410 IPR022675 GO:0004345(InterPro)|GO:0006006(InterPro)|GO:0050661(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Artr3g11910 K00036 glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Artr Artr-Chr1:502017110 Artr3g11910 Artr-Chr3:407766502 dispersed
Artr Artr-Chr3:407766502 Artr9g04580 Artr-Chr9:182173582 dispersed