AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Artr3g11987 ATGAGTAAAATCTTAGCTATTCTTTTTTGCTTCTTGTTAACAAATTTATCAGTCTCGTACGCTCAAAACTGTAATAATTATGCTTTTTCTAGTAACGCGGTATACGCGACTTGTGTCACGTTACCAGTTTTAAACTCACATCTTCATTGGAACTACCATACTAATGGTACAGTTGACGTGGCATTTCGTCACACAGGGTCCCCCACAAACCAATGGGTGGCATGGGCCTTAAATTTTGATCGGCCAGGTATGGTTGGTGCACAAGCACTTGTAGCATTAACAAGCTCAAACGGGTCGGTTCAAGCTTATACTAGTGCTGTAACAAGTTATAATACGGGTTTACAACGGAGTTCTTTAAGCTTTGATGTGCCTATGATTAGAAGTGAGAGAGTTAATGGAGATGTGGTTATTTATGCAACGTTGGTTTTGCCACGTGGAAGGACGAGATTTAATCAAGTGTGGCAAGTGGGTCCTGTTGCTAATGGAGCTCCGAGTATTCATGGGTTGGGTTCGGATAATAGGAACTCGATTGGGTCGGTTGACTTTAGTACTGGTCAAACTGCTGGTGGTGGTAATGTTGGTGGATCACGGATGCGAAGGAGGAATACTCATGGAGTATTAAACGCTGTTAGTTGGGGAGTATTGATGCCTATGGGAGCTATGACAGCAAGATATTTAAAGGTGTTTAAAGTAGCTAATCCAGCCTGGTTCTATATCCATGCTGCTTGCCAAACATCAGCCTATGCTGTAGGTGTAGCGGGATGGGCCACTGGACTCAAACTCGGCAGTGACTCAGCTGGAATCACTCACACGAGTCATCGCAACATTGGAATCATCCTCTTTACACTTGGAACACTTCAGGTTTTTGCTTTGCTGTTGAGGCCTAAGCCAGACAACAAGTACAGATTTTATTGGAACATATACCACCATGGCCTTGGATACTCGGTGATCATCTTGAGCATTATCAACGTCTACGAGGGACTTGATATCTTGGACCCTGAGAAGAAGTGGAAGGACGCGTACACCGGCATACTTATCTCTTTGGGGGTTATCACGGTTCTGTTAGAAGCTTTGACTTGGTTCATCGTTTTGAAGAGGAAGAAGGAAGACAAAAGGACACATGCAGGGACTAATGGTTCATATGGAGCCAATGGACTTGCGTAG 1164 43.9 MSKILAILFCFLLTNLSVSYAQNCNNYAFSSNAVYATCVTLPVLNSHLHWNYHTNGTVDVAFRHTGSPTNQWVAWALNFDRPGMVGAQALVALTSSNGSVQAYTSAVTSYNTGLQRSSLSFDVPMIRSERVNGDVVIYATLVLPRGRTRFNQVWQVGPVANGAPSIHGLGSDNRNSIGSVDFSTGQTAGGGNVGGSRMRRRNTHGVLNAVSWGVLMPMGAMTARYLKVFKVANPAWFYIHAACQTSAYAVGVAGWATGLKLGSDSAGITHTSHRNIGIILFTLGTLQVFALLLRPKPDNKYRFYWNIYHHGLGYSVIILSIINVYEGLDILDPEKKWKDAYTGILISLGVITVLLEALTWFIVLKRKKEDKRTHAGTNGSYGANGLA* 388
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Artr3g11987 387 CDD DOMON-CIL1-like 35 184 IPR045265 -
Artr3g11987 387 SMART 561-7 203 328 IPR006593 -
Artr3g11987 387 CDD Cyt-b561-FRRS1-like 179 357 - -
Artr3g11987 387 Pfam Protein of unknown function (DUF568) 84 182 IPR045265 -
Artr3g11987 387 Pfam Eukaryotic cytochrome b561 204 328 IPR006593 -
Artr3g11987 387 FunFam Cytochrome b561 and DOMON domain-containing protein 182 372 - -
Artr3g11987 387 PIRSF UCP037471 1 385 IPR017214 -
Artr3g11987 387 ProSiteProfiles DOMON domain profile. 44 157 IPR005018 -
Artr3g11987 387 ProSiteProfiles Cytochrome b561 domain profile. 163 364 IPR006593 -
Artr3g11987 387 PANTHER CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEIN 5 368 - -
Artr3g11987 387 Gene3D - 182 374 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Artr3g11987 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
21921 Artr1g02088 Artr3g11987
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Artr Artr-Chr2:238408068 Artr3g11987 Artr-Chr3:410492024 dispersed
Artr Artr-Chr3:410492024 Artr4g03453 Artr-Chr4:109603336 dispersed
Artr Artr-Chr2:152821699 Artr3g11987 Artr-Chr3:410492024 transposed
Artr Artr-Chr1:60115114 Artr3g11987 Artr-Chr3:410492024 wgd