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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Artr3g12008 ATGTCGTTGACCGTAGAAGCTGTTTCTGGTTGTTCCAAGGACATGGGGTTCGAAGAAAACAAGGAACAAGGCAAAGAAAGTATTAAAAGAAGTGAGAGTGAATCTTCATTTTGTGAAAGTGAAAATGAAGGAGATGAAGTTGAAGATACTAAAATTGAATTGGGTCCGCAATGCACCCTTAAAGATCAACTTGAGAAGGATAAGGATGATGAGAGTCTGAGAAAGTGGAAAGAACAACTACTTGGGAATGTTGATATTAATGATGTTGGAGAATCATTAGAACCAGAAGTGAAGATCCTCAGTCTTTCAATACTGTCCCCAGGAAGATCCGACATTGTTCTTGCAATACCCACAGATGGAAAACCTAAAGGCTCATGGTTTACACTGAAAGAAGGTTCTCGTTACAGCCTCAGGTTCTCCTTTCAAGTTAAACATAACATTGTTTCCGGTTTAAAGTACACCAACAATGTATGGAAAACTGGTGTCAAGGTGGATAACGTGAAACAGATGCTTGGTACTTTTAGTCCACAGCAAGAAGCATACACTTATGATATTCCTGAGGAGACTACACCTTCTGGTTACTTTGCAAGAGGATCTTACTCTGCTAAGACGAAGTTTGTTGATGATGACAACAAATGCTACTTGGAGATTAGCTATACCTTTGATATCCGAAAAGATTGGGCAAGTGGTAAATAG 696 39.22 MSLTVEAVSGCSKDMGFEENKEQGKESIKRSESESSFCESENEGDEVEDTKIELGPQCTLKDQLEKDKDDESLRKWKEQLLGNVDINDVGESLEPEVKILSLSILSPGRSDIVLAIPTDGKPKGSWFTLKEGSRYSLRFSFQVKHNIVSGLKYTNNVWKTGVKVDNVKQMLGTFSPQQEAYTYDIPEETTPSGYFARGSYSAKTKFVDDDNKCYLEISYTFDIRKDWASGK* 232
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Artr3g12008 231 MobiDBLite consensus disorder prediction 1 58 - -
Artr3g12008 231 Pfam RHO protein GDP dissociation inhibitor 40 226 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Artr3g12008 231 PRINTS RHO protein GDP dissociation inhibitor signature 147 163 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Artr3g12008 231 PRINTS RHO protein GDP dissociation inhibitor signature 180 192 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Artr3g12008 231 PRINTS RHO protein GDP dissociation inhibitor signature 206 223 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Artr3g12008 231 PRINTS RHO protein GDP dissociation inhibitor signature 164 179 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Artr3g12008 231 Gene3D Coagulation Factor XIII, subunit A, domain 1 49 229 IPR024792 -
Artr3g12008 231 PANTHER RHO GDP-DISSOCIATION INHIBITOR 29 227 IPR000406 GO:0005094(PANTHER)|GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0005829(PANTHER)|GO:0007266(InterPro)|GO:0007266(PANTHER)|GO:0016020(PANTHER)
Artr3g12008 231 FunFam Rho GDP-dissociation inhibitor 1 50 229 - -
Artr3g12008 231 SUPERFAMILY E set domains 39 227 IPR014756 -
Artr3g12008 231 MobiDBLite consensus disorder prediction 15 37 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Artr3g12008 K12462 Rho GDP-dissociation inhibitor
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Event-related genes

Select Gene_1 Gene_2 Event_name
21925 Artr1g02107 Artr3g12008
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Artr Artr-Chr1:453846498 Artr3g12008 Artr-Chr3:411537565 transposed
Artr Artr-Chr3:129678142 Artr3g12008 Artr-Chr3:411537565 transposed
Artr Artr-Chr3:345561851 Artr3g12008 Artr-Chr3:411537565 transposed
Artr Artr-Chr8:206678722 Artr3g12008 Artr-Chr3:411537565 transposed
Artr Artr-Chr1:60592554 Artr3g12008 Artr-Chr3:411537565 wgd