AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Artr3g12059 | ATGGGCATCACTGGAGAACTAGTTAGAAGTGTGTTCTCGAAAAATAGATCTTTCGGAACCACCCACGACACCAATGTGATGCGAAACAATTCAGTTGAAAAGAAGAGATGGACTTCAGTGAGATCATATCTTTGTGGTGATGAATTTAATTCTGTTTTAGCCGAAGAAGATTGCGCTTCTAGAAGAAGTGATAAAACTGCTCTGAGTTCGGTTTTTCTTGCTGATTATTCTGGTTCTGCTAGAACATCAAAAGCTACTATTTTTAGCTCAACAATTGAAGATGACTCATCATCTATCAAGGGTTCAGAAGCCAGTGTCACACAGCATCTAGAACACGAGGAAAATACTACTTTGAGCTTGGAACACAGGGCTGCAGTTGTCATTCAGACAGCATTTAGAAGTTTTATGGCAAGGCGTCGAATTGAAATACCTGAACCTGTGGATATTGGTGATCATGATCAAGAGTCGATAGCAACATCAATAGAAGTGCAAACTGGAAACTCGGTGGTGGAAGCTAAAGAGGTTAGCGAATGTTTCACTCATAGTGTGCAGCAGCATCACAAGGGTACTAGAGCACAAACGTTAAGGCTAAAGGAGGATTGGGACGATAGCACCCTGAGTAGCAACATATCGAAAATGAGGATGCAACATAGACTAGAGGCATCTACTAGACGTGAAAGAGCACTCGCCTATGCTTTCTCTCAACAGTTGAGGATATGCTCAAAGAAGAAACAAAATGTGAGATCCGGGAACGATTCAGAAGCAAACATGAGCTGGAGTTGGCTTGAGAGATGGATGGCGACCCGACAACACGACACTTCATTTGGAGACATAAGTAAACAGTTTGAACAATTAAATGTGAATGAAAAACTAATGGTACAAACTAGAGTTTTATCAGATTTTGCTGGGGAGGAGAAGGAAAGTTGTGGATCAAATGAAGTTTCTATGCGTTTTGATAACATTTCTCTGAGCTCAAAATCAGGCGAAAAATCTTACTATAAACCCACTCGAAATAGACTTAAGGCTACAAGTGTCTCGAGGCGAAAGACATCACCAAGTTATGGTTTCAGTAAGGACTATTCTAAGGTGAAGAAGCAAGGAGGACACAAAGAGATTAGAAGTGAAGATCAACAATAA | 1137 | 40.63 | MGITGELVRSVFSKNRSFGTTHDTNVMRNNSVEKKRWTSVRSYLCGDEFNSVLAEEDCASRRSDKTALSSVFLADYSGSARTSKATIFSSTIEDDSSSIKGSEASVTQHLEHEENTTLSLEHRAAVVIQTAFRSFMARRRIEIPEPVDIGDHDQESIATSIEVQTGNSVVEAKEVSECFTHSVQQHHKGTRAQTLRLKEDWDDSTLSSNISKMRMQHRLEASTRRERALAYAFSQQLRICSKKKQNVRSGNDSEANMSWSWLERWMATRQHDTSFGDISKQFEQLNVNEKLMVQTRVLSDFAGEEKESCGSNEVSMRFDNISLSSKSGEKSYYKPTRNRLKATSVSRRKTSPSYGFSKDYSKVKKQGGHKEIRSEDQQ* | 379 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Artr3g12059 | 378 | ProSiteProfiles | IQ motif profile. | 121 | 148 | - | - | |
| Artr3g12059 | 378 | MobiDBLite | consensus disorder prediction | 326 | 378 | - | - | |
| Artr3g12059 | 378 | Pfam | IQ calmodulin-binding motif | 122 | 140 | IPR000048 | GO:0005515(InterPro) | |
| Artr3g12059 | 378 | MobiDBLite | consensus disorder prediction | 362 | 378 | - | - | |
| Artr3g12059 | 378 | MobiDBLite | consensus disorder prediction | 326 | 357 | - | - | |
| Artr3g12059 | 378 | PANTHER | IQ-DOMAIN 5-RELATED | 183 | 343 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Artr3g12059 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Artr | Artr-Chr3:413682824 | Artr7g08006 | Artr-Chr7:288246098 | dispersed | |
| Artr | Artr-Chr3:413682824 | Artr2g04524 | Artr-Chr2:142974075 | transposed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Artr1g03712 | . | 1 | 430 | IQD Protein family | AT5G03040 | 39.583 | 8.62e-83 | 261.0 | |
| Artr1g04139 | . | 157 | 185 | IQD Protein family | AT1G18840 | 72.414 | 6.10e-10 | 52.0 | |
| Artr1g04658 | . | 46 | 333 | IQD Protein family | AT5G07240 | 44.643 | 9.23e-39 | 141.0 | |
| Artr1g09060 | . | 1 | 794 | IQD Protein family | AT1G19870 | 35.016 | 4.97e-107 | 345.0 | |
| Artr1g10723 | . | 1 | 374 | IQD Protein family | AT4G14750 | 33.333 | 7.67e-42 | 149.0 | |
| Artr1g10765 | . | 1 | 374 | IQD Protein family | AT4G14750 | 33.504 | 2.50e-41 | 148.0 | |
| Artr2g01527 | . | 1 | 330 | IQD Protein family | AT3G16490 | 36.207 | 4.76e-37 | 135.0 | |
| Artr2g03858 | ACH | 1 | 353 | IQD Protein family | AT3G16490 | 53.181 | 1.22e-99 | 300.0 | |
| Artr2g04524 | . | 57 | 237 | IQD Protein family | AT3G15050 | 50.829 | 6.02e-63 | 195.0 | |
| Artr2g06251 | . | 82 | 200 | IQD Protein family | AT3G15050 | 52.101 | 5.58e-35 | 119.0 | |
| Artr2g12727 | . | 1 | 382 | IQD Protein family | AT4G14750 | 44.578 | 1.07e-83 | 257.0 | |
| Artr2g12874 | . | 1 | 382 | IQD Protein family | AT4G14750 | 45.631 | 7.12e-85 | 261.0 | |
| Artr3g02271 | . | 11 | 534 | IQD Protein family | AT4G00820 | 54.011 | 8.44e-155 | 451.0 | |
| Artr3g05209 | . | 1 | 147 | IQD Protein family | AT5G03960 | 43.243 | 5.50e-18 | 82.0 | |
| Artr3g07343 | . | 1 | 374 | IQD Protein family | AT4G14750 | 49.367 | 9.20e-93 | 281.0 | |
| Artr3g11404 | . | 2 | 240 | IQD Protein family | AT3G15050 | 44.269 | 5.41e-69 | 212.0 | |
| Artr3g12059 | . | 1 | 402 | IQD Protein family | AT5G35670 | 42.755 | 1.44e-78 | 246.0 | |
| Artr4g03296 | . | 234 | 437 | IQD Protein family | AT1G74690 | 41.038 | 2.05e-22 | 94.0 | |
| Artr4g06739 | . | 1 | 413 | IQD Protein family | AT2G26180 | 56.854 | 8.52e-142 | 410.0 | |
| Artr4g06780 | . | 1 | 413 | IQD Protein family | AT2G26180 | 56.854 | 8.52e-142 | 410.0 | |
| Artr4g07727 | ACH | 3 | 331 | IQD Protein family | AT5G07240 | 32.987 | 6.34e-32 | 123.0 | |
| Artr4g12736 | . | 149 | 516 | IQD Protein family | AT3G59690 | 46.617 | 3.19e-84 | 271.0 | |
| Artr4g12737 | . | 295 | 633 | IQD Protein family | AT2G43680 | 34.637 | 1.18e-44 | 170.0 | |
| Artr4g12738 | . | 1 | 124 | IQD Protein family | AT3G59690 | 39.552 | 1.28e-11 | 61.6 | |
| Artr5g03433 | ACH | 1 | 482 | IQD Protein family | AT4G23060 | 39.034 | 4.19e-60 | 201.0 | |
| Artr5g04525 | . | 1 | 392 | IQD Protein family | AT3G22190 | 54.433 | 2.09e-118 | 349.0 | |
| Artr5g09352 | . | 1 | 450 | IQD Protein family | AT5G03040 | 51.876 | 9.91e-132 | 385.0 | |
| Artr5g12757 | . | 1 | 517 | IQD Protein family | AT3G59690 | 50.175 | 4.38e-152 | 443.0 | |
| Artr6g00414 | . | 1 | 414 | IQD Protein family | AT1G72670 | 42.984 | 8.14e-87 | 268.0 | |
| Artr6g00793 | ACH | 1 | 353 | IQD Protein family | AT3G16490 | 51.531 | 9.54e-89 | 271.0 | |
| Artr6g03300 | . | 1 | 571 | IQD Protein family | AT1G18840 | 35.959 | 1.52e-79 | 256.0 | |
| Artr6g06135 | . | 1 | 575 | IQD Protein family | AT1G74690 | 37.733 | 1.34e-75 | 248.0 | |
| Artr6g07085 | . | 5 | 100 | IQD Protein family | AT3G51380 | 51.163 | 7.88e-30 | 102.0 | |
| Artr6g08495 | . | 1 | 269 | IQD Protein family | AT3G52290 | 41.844 | 2.72e-50 | 172.0 | |
| Artr7g01380 | . | 1 | 794 | IQD Protein family | AT1G19870 | 33.815 | 2.50e-89 | 293.0 | |
| Artr7g06627 | . | 1 | 450 | IQD Protein family | AT5G03040 | 54.506 | 5.26e-149 | 431.0 | |
| Artr7g07909 | . | 102 | 575 | IQD Protein family | AT1G74690 | 41.701 | 3.97e-82 | 265.0 | |
| Artr7g08006 | . | 27 | 243 | IQD Protein family | AT5G35670 | 35.16 | 2.11e-19 | 82.8 | |
| Artr7g09364 | . | 1 | 450 | IQD Protein family | AT5G03040 | 47.269 | 1.23e-118 | 352.0 | |
| Artr7g10928 | . | 7 | 343 | IQD Protein family | AT5G07240 | 44.598 | 3.96e-45 | 157.0 | |
| Artr7g11159 | . | 434 | 534 | IQD Protein family | AT4G00820 | 39.806 | 1.63e-08 | 48.5 | |
| Artr7g11160 | . | 12 | 316 | IQD Protein family | AT4G00820 | 36.977 | 4.67e-45 | 159.0 | |
| Artr8g03455 | . | 1 | 443 | IQD Protein family | AT5G13460 | 44.667 | 3.14e-100 | 303.0 | |
| Artr8g05233 | . | 1 | 237 | IQD Protein family | AT3G15050 | 46.825 | 3.95e-66 | 206.0 | |
| Artr9g08603 | . | 11 | 534 | IQD Protein family | AT4G00820 | 42.287 | 2.70e-114 | 347.0 |