AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Artr3g12073 ATGGAGCAGGAAAGAAATGATCATGAAATATCGGTTACTTGGAGAGGGAAGAAATATGTTGTGACTATGAATTTAAGTGCCACTTTAGAAGAATTGGGGCGTGAGTTACAGAAACTAACTGCAGTGAAAGCAGATACTTTGAAGCTCATTGTACAGTCCCGGAAAGCGTCTAAATTGTTGTCGCCTTTCTCTGATGAGCATTCTCGTCTCACTTTGCAGGAAACATCCATTGAGGGGAAACCTATACGGATGATGGGAGTGCCACAGGAAGAGGTTGATCAAGTTCTAAAAGGTGCTAAGACGGACATGAGGATTGCTGGATTTGATGAAGAGGAGAAGCGGATGAGACAAAGAATGTCAAATGGGTTTGATGCCCCATTGCAGCTTCCGTCTGGAAATTATGTTTTTGGTGGTTTTAAGACGCTCGAGCTTCCAGGGATTGAGTTGTATCCTCCACCGTCAGAAGCGTTGAGACTAATGCACACACTTGCTGCAGACAAAGGAATTGTCGCTATCATGAATAAGCATAAATGGCGTGTGGGAATCATGACTGAGATGGCTCCGGAGGGTTATGTCGGCGTAAGTCCCGTGTGCATCCTTGGTTTAAACAAGAATCAGGGCGAGGAGATATCTTTGCGTCTTCGAACTGATGATCTAAAGGGTTTCAGAAAATATCAGAGCATTAAAAAGACTCTTCTGCATGAACTTGCCCATATGGTATTCTCTGAACATGATGCGAAATTCTATGCTCTAGATAGTCAGCTTAACAAGGAGGCCGCTGCTCTAGACTGGACTAGATCTACTGGTCATACCTTAAGCGGGTCCCAGAAGACGCAACAATATGGATATGAGTTCCATGCTACTGATAATAGTAATAGTAGTAGTAGTTTGTCTCATAAACTTGGTGGAAGCCAATCGTCCAGCTCACTGGCTAATGCACGAGCATCTTCTGTTGCTGCTGCTTACCAGCGTTTAGTAATTGCATCCACCAACCCATCAACACCTGAATCACGTAAAGAACCCGACCCTGATGATTCTATGGATGTGACTATGAATAAGCCAGACGCTATTAACATTAGTGAAGAACAAACTTATGAACCTGACCCTGATGACCAGGAAGTGCTAAACAACAAAAACGAGCCCGACCCAGATGACAGTATAAACAGTGAAGCTATGGAATCTGAACCATGTGGAGAATCAACCGAAAAAACTTACGAACCTGACCCTGATGACCAGGAAGTGCTAAACAACAAAAACGAGCCCGACCCAGATGACAGTATAAACAGTGAAGCTATGGAATCTGAACCATGTGGAGAATCAACCGAAAACATTATTACTCCTGAGCTTAATCATGGTAAAACTGAAGAAAAAAATGAACCTGATCCTGATGATATAATCTTAGAGGATGAAGAACTGCAGAGGATTCAAGATCCTGTTATGATTGCTTGTAATCGTTTGAAGAAGTCCATTGAGACGCTGCAATCTGAAGTCAGTCCTGCAGAGGCTGCCATGGTTTTTCAGACTCTTGTTAAGATAGTCAAGAACGTTATTGAACACCCTAATGAAATAAAGTTCAAGAAATTACGCAAGGCTAATCCAGTAATCCAGAAGAACATTGCAAGTTATAATGCTGCAATGGAGATATTGTTCTTGATTGGTTTTTGTGAAGATGTTGTTCAAGATGAGATCGGGCGAGCGGAAGCTTATTTGGTGTTGAAGAGGAACGACCCAGGCTTGTTGTGGTTAGCAAAATCCTCTTTGGAGACATGCATTGCTTTCTAA 1782 42.54 MEQERNDHEISVTWRGKKYVVTMNLSATLEELGRELQKLTAVKADTLKLIVQSRKASKLLSPFSDEHSRLTLQETSIEGKPIRMMGVPQEEVDQVLKGAKTDMRIAGFDEEEKRMRQRMSNGFDAPLQLPSGNYVFGGFKTLELPGIELYPPPSEALRLMHTLAADKGIVAIMNKHKWRVGIMTEMAPEGYVGVSPVCILGLNKNQGEEISLRLRTDDLKGFRKYQSIKKTLLHELAHMVFSEHDAKFYALDSQLNKEAAALDWTRSTGHTLSGSQKTQQYGYEFHATDNSNSSSSLSHKLGGSQSSSSLANARASSVAAAYQRLVIASTNPSTPESRKEPDPDDSMDVTMNKPDAINISEEQTYEPDPDDQEVLNNKNEPDPDDSINSEAMESEPCGESTEKTYEPDPDDQEVLNNKNEPDPDDSINSEAMESEPCGESTENIITPELNHGKTEEKNEPDPDDIILEDEELQRIQDPVMIACNRLKKSIETLQSEVSPAEAAMVFQTLVKIVKNVIEHPNEIKFKKLRKANPVIQKNIASYNAAMEILFLIGFCEDVVQDEIGRAEAYLVLKRNDPGLLWLAKSSLETCIAF* 594
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Artr3g12073 593 CDD PUB-WLM 490 589 - -
Artr3g12073 593 MobiDBLite consensus disorder prediction 286 308 - -
Artr3g12073 593 Pfam WLM domain 148 325 IPR013536 -
Artr3g12073 593 PANTHER ZINC METALLOPROTEINASE-LIKE PROTEIN 1 435 - -
Artr3g12073 593 SMART PGNneu 504 573 - -
Artr3g12073 593 ProSiteProfiles WLM domain profile. 132 326 IPR013536 -
Artr3g12073 593 Gene3D - 3 92 - -
Artr3g12073 593 MobiDBLite consensus disorder prediction 371 385 - -
Artr3g12073 593 MobiDBLite consensus disorder prediction 396 425 - -
Artr3g12073 593 MobiDBLite consensus disorder prediction 433 448 - -
Artr3g12073 593 Gene3D - 486 587 - -
Artr3g12073 593 SUPERFAMILY PUG domain-like 479 591 IPR036339 -
Artr3g12073 593 MobiDBLite consensus disorder prediction 327 462 - -
Artr3g12073 593 Pfam PUB domain 505 578 IPR018997 -
Artr3g12073 593 SUPERFAMILY Ubiquitin-like 7 76 IPR029071 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Artr3g12073 K22685 DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]