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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Artr3g12098 ATGAAATTCAACCAACAAGAGCATGACACGTGTCGCACTATCGAAACAGTTACTGAGAATTGTAATGGTGAGGAGGCAGAGGTGGTGTATACGCCTCCGTTGAATTTCTCGATGGTTGATAATGGAATATATCGTTCTGGTTTTCCTGATGTCCTCAATTTCTCGTTTCTTAAAACCCTTGGCTTACGCTCTATTGTATATTTGTGTCCTGAACCGTATCCGGAGCATAACATGGAGTTTTTGAAAGCTAATGGAATTCAGTTATTTCAGTTTGGAATCGAAGGAACTAAGGAACCTTTTGTTAATATTCCTGAGGACAGAATTCGTGAAGCGTTAAAAGTTGTTCTTGATGTTAAAAATCAACCCTTGTTGATTCATTGCAAAAGAGGCAAGCACCGAACGGGTTGTCTTGTGGGATGCATGAGAAAAATTCAAAGATGGTGCCTGACGTCTATTTTTGATGAGTACCAAAGATTTGCAGCTGCTAAGGCTAGAATTTCAGATCAGAGGTTTATGGAGGTGTTTGATGCTTCTGGATTCAAAGATATACCACCATGTCCATGTAATTGTTCTAAGAGGTAA 582 39.52 MKFNQQEHDTCRTIETVTENCNGEEAEVVYTPPLNFSMVDNGIYRSGFPDVLNFSFLKTLGLRSIVYLCPEPYPEHNMEFLKANGIQLFQFGIEGTKEPFVNIPEDRIREALKVVLDVKNQPLLIHCKRGKHRTGCLVGCMRKIQRWCLTSIFDEYQRFAAAKARISDQRFMEVFDASGFKDIPPCPCNCSKR* 194
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Artr3g12098 193 PRINTS Plant and fungal dual specificity phosphatase signature 67 80 IPR020428 GO:0016791(InterPro)
Artr3g12098 193 PRINTS Plant and fungal dual specificity phosphatase signature 86 100 IPR020428 GO:0016791(InterPro)
Artr3g12098 193 PRINTS Plant and fungal dual specificity phosphatase signature 30 47 IPR020428 GO:0016791(InterPro)
Artr3g12098 193 PRINTS Plant and fungal dual specificity phosphatase signature 103 117 IPR020428 GO:0016791(InterPro)
Artr3g12098 193 Pfam Tyrosine phosphatase family 32 181 IPR004861 -
Artr3g12098 193 FunFam probable tyrosine-protein phosphatase At1g05000 29 179 - -
Artr3g12098 193 Gene3D Protein tyrosine phosphatase superfamily 30 179 IPR029021 -
Artr3g12098 193 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 30 175 IPR029021 -
Artr3g12098 193 ProSiteProfiles Dual specificity protein phosphatase domain profile. 35 186 IPR020422 GO:0006470(InterPro)
Artr3g12098 193 PANTHER TYROSINE-PROTEIN PHOSPHATASE 21 184 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
Artr3g12098 193 CDD PFA-DSP-Siw14 32 176 - -
Artr3g12098 193 ProSitePatterns Tyrosine specific protein phosphatases active site. 125 135 IPR016130 GO:0016311(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Artr3g12098 K18045 tyrosine-protein phosphatase SIW14 [EC:3.1.3.48]
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Event-related genes

Select Gene_1 Gene_2 Event_name
21932 Artr1g02179 Artr3g12098
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Artr Artr-Chr3:4314089 Artr3g12098 Artr-Chr3:415043328 transposed
Artr Artr-Chr3:290686460 Artr3g12098 Artr-Chr3:415043328 transposed
Artr Artr-Chr6:369002229 Artr3g12098 Artr-Chr3:415043328 transposed
Artr Artr-Chr7:58625177 Artr3g12098 Artr-Chr3:415043328 transposed
Artr Artr-Chr1:62995867 Artr3g12098 Artr-Chr3:415043328 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Artr1g01405 . 155 264 Protein tyrosine phosphatase (PTP) family AT3G10940 80.0 7.52e-61 186.0
Artr1g02179 ACH 16 203 Protein tyrosine phosphatase (PTP) family AT1G05000 63.298 2.45e-84 246.0
Artr1g03835 . 6 784 Protein tyrosine phosphatase (PTP) family AT3G55270 49.095 0.0 712.0
Artr1g09734 . 19 478 Protein tyrosine phosphatase (PTP) family AT3G10550 73.536 0.0 711.0
Artr1g09735 . 610 840 Protein tyrosine phosphatase (PTP) family AT3G10550 46.774 2.55e-75 242.0
Artr2g02549 ACH 1103 1274 Protein tyrosine phosphatase (PTP) family AT5G58160 49.419 4.40e-48 164.0
Artr2g02566 ACH 1 408 Protein tyrosine phosphatase (PTP) family AT5G58160 63.659 0.0 577.0
Artr2g02598 ACH 1103 1274 Protein tyrosine phosphatase (PTP) family AT5G58160 43.023 6.15e-37 131.0
Artr2g03280 . 29 190 Protein tyrosine phosphatase (PTP) family AT3G23610 61.111 3.13e-72 214.0
Artr2g04780 . 1 257 Protein tyrosine phosphatase (PTP) family AT2G04550 55.319 1.10e-100 293.0
Artr2g07976 . 14 336 Protein tyrosine phosphatase (PTP) family AT1G71860 61.562 9.09e-144 408.0
Artr2g08011 . 66 186 Protein tyrosine phosphatase (PTP) family AT3G23610 38.843 7.32e-18 79.3
Artr2g09369 . 36 330 Protein tyrosine phosphatase (PTP) family AT1G71860 53.443 7.72e-116 337.0
Artr2g12596 ACH 1 392 Protein tyrosine phosphatase (PTP) family AT5G58160 63.452 0.0 566.0
Artr2g13956 . 19 227 Protein tyrosine phosphatase (PTP) family AT5G56610 65.072 7.30e-98 285.0
Artr3g00163 . 43 210 Protein tyrosine phosphatase (PTP) family AT1G05000 60.119 8.50e-75 223.0
Artr3g03177 . 366 481 Protein tyrosine phosphatase (PTP) family AT5G01290 58.197 1.30e-38 135.0
Artr3g04442 . 29 190 Protein tyrosine phosphatase (PTP) family AT3G23610 61.728 1.07e-72 215.0
Artr3g07941 . 280 337 Protein tyrosine phosphatase (PTP) family AT3G52180 53.448 8.26e-18 74.3
Artr3g08353 . 1 657 Protein tyrosine phosphatase (PTP) family AT5G01290 62.936 0.0 847.0
Artr3g08831 . 90 139 Protein tyrosine phosphatase (PTP) family AT1G05000 60.0 6.30e-14 65.5
Artr3g12098 ACH 17 207 Protein tyrosine phosphatase (PTP) family AT1G05000 71.204 9.03e-98 280.0
Artr3g13090 . 41 611 Protein tyrosine phosphatase (PTP) family AT3G19420 69.231 0.0 816.0
Artr4g00622 . 51 656 Protein tyrosine phosphatase (PTP) family AT5G01290 52.54 0.0 603.0
Artr4g02460 . 1 653 Protein tyrosine phosphatase (PTP) family AT5G01290 53.343 0.0 681.0
Artr4g11605 . 76 159 Protein tyrosine phosphatase (PTP) family AT3G01510 28.571 6.32e-07 48.9
Artr5g01162 . 265 326 Protein tyrosine phosphatase (PTP) family AT3G52180 40.625 8.47e-07 49.3
Artr5g01164 . 265 326 Protein tyrosine phosphatase (PTP) family AT3G52180 40.625 8.47e-07 49.3
Artr5g05308 . 1 337 Protein tyrosine phosphatase (PTP) family AT2G35680 53.623 1.80e-115 334.0
Artr5g10159 . 18 239 Protein tyrosine phosphatase (PTP) family AT3G44620 61.161 2.47e-91 267.0
Artr6g00141 . 54 182 Protein tyrosine phosphatase (PTP) family AT3G23610 33.533 4.37e-24 94.7
Artr6g08225 . 1 378 Protein tyrosine phosphatase (PTP) family AT3G52180 58.656 1.82e-154 438.0
Artr6g10468 . 4 191 Protein tyrosine phosphatase (PTP) family AT3G02800 60.638 1.80e-86 253.0
Artr7g01690 . 8 197 Protein tyrosine phosphatase (PTP) family AT3G02800 64.737 1.40e-91 265.0
Artr7g09533 . 1 473 Protein tyrosine phosphatase (PTP) family AT3G55270 67.292 0.0 665.0
Artr7g10333 . 64 282 Protein tyrosine phosphatase (PTP) family AT3G10940 82.648 3.33e-141 397.0
Artr8g06227 . 16 307 Protein tyrosine phosphatase (PTP) family AT2G35320 54.455 1.45e-121 349.0
Artr9g03526 . 74 611 Protein tyrosine phosphatase (PTP) family AT3G19420 62.385 0.0 713.0
Artr9g04107 . 1 395 Protein tyrosine phosphatase (PTP) family AT5G39400 55.528 5.83e-160 455.0
Artr9g07401 . 72 462 Protein tyrosine phosphatase (PTP) family AT3G55270 57.711 3.08e-164 490.0