Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Artr3g12167 | ATGAGGCTGGTTGGTTCGGACAAGCTTCCGTATGTTGCTAGCGTGGAGAAGCTAGAGGCTGATCATAGGAGTAATGTGAAGGTTAAGGTTAGGAGGTATTACAAGCCGGAGGAATCGTTGGGAGGGAGGTGTACGTTTCATGGTGCAAAGGAGCTATTTTTGTCGGATCATTATGATTGGCAGAGTGCAGGTACGATTGAAGGGGAGTGTATTGTGCATTCTTTTAGGAATTATAAGAAGCTGGAGAATGTGGCTACTGAGGACTATTTTTGTCGGTTTGAATACAAGACTGCTACTGATACATTCACGCCTGATCGTGTCGCTGTGTACTGCAAGTGTGAGATGCCCAATAATCTAGATGAATTCATGGTGAAATGTGAAGTATGCATGGACAGGTTCCATCCAGCTTGTATAGGGATGACAACTGAAGATGTAAAGAAATTGGAGCAGTTTGTGTGCTCTGACTGTGCTCCTTATTTGATGCATAAGGACCATTGA | 498 | 43.98 | MRLVGSDKLPYVASVEKLEADHRSNVKVKVRRYYKPEESLGGRCTFHGAKELFLSDHYDWQSAGTIEGECIVHSFRNYKKLENVATEDYFCRFEYKTATDTFTPDRVAVYCKCEMPNNLDEFMVKCEVCMDRFHPACIGMTTEDVKKLEQFVCSDCAPYLMHKDH* | 166 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Artr3g12167 | 165 | SUPERFAMILY | FYVE-PHD zinc finger | 100 | 159 | IPR011011 | - | |
| Artr3g12167 | 165 | ProSitePatterns | Zinc finger PHD-type signature. | 111 | 156 | IPR019786 | - | |
| Artr3g12167 | 165 | SMART | PHD-3 | 110 | 157 | IPR001965 | - | |
| Artr3g12167 | 165 | Gene3D | Zinc-RING finger domain, C3HC4 (zinc finger) | 102 | 165 | IPR013083 | - | |
| Artr3g12167 | 165 | Pfam | PHD-finger | 111 | 156 | IPR019787 | - | |
| Artr3g12167 | 165 | ProSiteProfiles | BAH domain profile. | 1 | 106 | IPR001025 | GO:0003682(InterPro) | |
| Artr3g12167 | 165 | Gene3D | - | 3 | 101 | IPR043151 | - | |
| Artr3g12167 | 165 | Pfam | BAH domain | 7 | 104 | IPR001025 | GO:0003682(InterPro) | |
| Artr3g12167 | 165 | SMART | BAH-4 | 3 | 106 | IPR001025 | GO:0003682(InterPro) | |
| Artr3g12167 | 165 | PANTHER | OS08G0421900 PROTEIN | 5 | 159 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Artr3g12167 | K25868 | chromatin remodeling protein |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 21934 | Artr1g02229 | Artr3g12167 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Artr | Artr-Chr3:418156772 | Artr5g06495 | Artr-Chr5:218940341 | dispersed | |
| Artr | Artr-Chr3:418156772 | Artr3g12173 | Artr-Chr3:418322829 | proximal |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Artr | BAH | 6.5e-13 | No_clan | TR | PHD |