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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Artr3g12167 ATGAGGCTGGTTGGTTCGGACAAGCTTCCGTATGTTGCTAGCGTGGAGAAGCTAGAGGCTGATCATAGGAGTAATGTGAAGGTTAAGGTTAGGAGGTATTACAAGCCGGAGGAATCGTTGGGAGGGAGGTGTACGTTTCATGGTGCAAAGGAGCTATTTTTGTCGGATCATTATGATTGGCAGAGTGCAGGTACGATTGAAGGGGAGTGTATTGTGCATTCTTTTAGGAATTATAAGAAGCTGGAGAATGTGGCTACTGAGGACTATTTTTGTCGGTTTGAATACAAGACTGCTACTGATACATTCACGCCTGATCGTGTCGCTGTGTACTGCAAGTGTGAGATGCCCAATAATCTAGATGAATTCATGGTGAAATGTGAAGTATGCATGGACAGGTTCCATCCAGCTTGTATAGGGATGACAACTGAAGATGTAAAGAAATTGGAGCAGTTTGTGTGCTCTGACTGTGCTCCTTATTTGATGCATAAGGACCATTGA 498 43.98 MRLVGSDKLPYVASVEKLEADHRSNVKVKVRRYYKPEESLGGRCTFHGAKELFLSDHYDWQSAGTIEGECIVHSFRNYKKLENVATEDYFCRFEYKTATDTFTPDRVAVYCKCEMPNNLDEFMVKCEVCMDRFHPACIGMTTEDVKKLEQFVCSDCAPYLMHKDH* 166
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Artr3g12167 165 SUPERFAMILY FYVE-PHD zinc finger 100 159 IPR011011 -
Artr3g12167 165 ProSitePatterns Zinc finger PHD-type signature. 111 156 IPR019786 -
Artr3g12167 165 SMART PHD-3 110 157 IPR001965 -
Artr3g12167 165 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 102 165 IPR013083 -
Artr3g12167 165 Pfam PHD-finger 111 156 IPR019787 -
Artr3g12167 165 ProSiteProfiles BAH domain profile. 1 106 IPR001025 GO:0003682(InterPro)
Artr3g12167 165 Gene3D - 3 101 IPR043151 -
Artr3g12167 165 Pfam BAH domain 7 104 IPR001025 GO:0003682(InterPro)
Artr3g12167 165 SMART BAH-4 3 106 IPR001025 GO:0003682(InterPro)
Artr3g12167 165 PANTHER OS08G0421900 PROTEIN 5 159 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Artr3g12167 K25868 chromatin remodeling protein
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Event-related genes

Select Gene_1 Gene_2 Event_name
21934 Artr1g02229 Artr3g12167
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Artr Artr-Chr3:418156772 Artr5g06495 Artr-Chr5:218940341 dispersed
Artr Artr-Chr3:418156772 Artr3g12173 Artr-Chr3:418322829 proximal
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Artr BAH 6.5e-13 No_clan TR PHD