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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Artr3g12188 ATGGAGGAGGTGATGACGTTAGCAGATGCAGCGTACCATGCTAACAAGGTGATCACAGCTGTGACACCATCGTCCTCAAGAGGTCCAGTCATGTTGTTGTATAGTGTTCCTTTGTTATCAGCGTTACTTGCCTTTGCTATTGCTCAGTTTCTTAAAGTCATTACTACTTGGTATAAGGAAAAGAGATGGGATCCTAAAAAGATTGTCGGCTCTGGTGGAATGCCATCATCTCATTCTTCAACTGTCGTGGCACTTGCAGTATCTATTGGTCTACATGAGGGAATTGACTCATCATCGTTTGCAATTGCTGTTGTCATGGCTTTTATTGTTATGTATGATGCAACTGGAGTCAGACTCCATGCTGGTCGCCAAGCTGAAGTGTTGAACCAGATAGTGTGTGAATTTCCTCCGGAGCACCCTTTATCCACATCCATACCTCTACGTGATTCGCTTGGGCATACTCCATTACAGGTGGTTGCAGGGGCCATACTAGGATGCATAGTGGCATTTGCGATGAAAGCAACTGACTAG 531 45.01 MEEVMTLADAAYHANKVITAVTPSSSRGPVMLLYSVPLLSALLAFAIAQFLKVITTWYKEKRWDPKKIVGSGGMPSSHSSTVVALAVSIGLHEGIDSSSFAIAVVMAFIVMYDATGVRLHAGRQAEVLNQIVCEFPPEHPLSTSIPLRDSLGHTPLQVVAGAILGCIVAFAMKATD* 177
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Artr3g12188 176 CDD PAP2-like 38 171 - -
Artr3g12188 176 Pfam Divergent PAP2 family 37 168 IPR003832 -
Artr3g12188 176 PANTHER ACID PHOSPHATASE-VANADIUM-DEPENDENT HALOPEROXIDASE-RELATED PROTEIN 22 174 IPR003832 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Artr3g12188 K09775 uncharacterized protein
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Artr Artr-Chr1:449699619 Artr3g12188 Artr-Chr3:418996992 dispersed
Artr Artr-Chr3:418996992 Artr4g00656 Artr-Chr4:19362109 dispersed