AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Artr3g12193 ATGGGTGAAACCCTAACTCCTAACCGTACACCAGGCCACAAACAAAGACCACAAATCCTATCACCCGACCGACCGCTTTTCCTCGGTTCTAATGACGACAAGCTCGAACGCGCTCAAGCACGCGCCGCACGCGCTGCCGCTATCCGTCGAAAACCGGTCGCTGCTCGTCAAGCGACCGACTCCACGGATCCGCCGTGTCTTGGTCAGGAGCAGATTATGGAGTTGTTTCAGAACTGCATCAAATTAGCTAGTGAAAATAAAATAAATCAGAAGAATACGTGGGAGTTGAATTTGATTGATCATTTGTGCGATATTATTAAAGTCGAAGAGGAGAATGACGTCGAAACCAATTTTCAGAAGGCAAGTTGCACTCTTGAAGCTGGAGTTCGAATATACTCAATGAGGGTGGATTCAGTCCATTCTGAAGCATATAAGGTTCTCGGAGGGATTAGTCGAGTTACACTGGACTCCGAACAAGATATTGTAGATGATGGCAACACAGACAACATGCCAGGAGAACGCACCACAAAGAAGGAGAAGGAGCACAAGTTATCTCCTTTAACGACATTGGAATCATCCTTTGAGGCTCTTAATGTAAAAAAGTTTGATGTTGCATTTGCTGTGGACCCTCTGTATCATCAAACAACTGCCCAGTTTGATGAAGGCGGATCAAAAGGTCTTTTACTGAATAACCTTGGAGTCTATGGTGGCTGCCGAATGGTTTTTGATTCACTTGAAGTACCCGGGAAGTGCATGTCATGCTCAAATGGCCACGATAAAGTAGATACTATTGATATTTCTTATGCCAAAGATGCTATGGAACAAATGGTATCAAACTTCTCAAAGAAACTTGAAATATCACCAACTCTAAGGGCTATAGTCAATATGTTTGATGAAGATAATAGAAGACCAGCAGATACCTTTTCGTCTTCCCAAAACTCTGTAGAACCCGATTATGAAGCTTATGATGATAATGCATATAATGAAGGTGGACATGATGAACCTTCAACCTGGGACTACATTAATGATAATCAGGCAAGCGTGCATGATGAGGGCGCATATGAAGGAGATGAAGAACTCTTTGCACCGGTTCATCATGAGGAGAACGAGCCGTATGCTTCTCAAAATGGTGAAGTAGATGACAAATTTGCTACAGTTGACAGCTTTCTGTTTCTAAGTCTTGGCTTAAATGGAAAACAAAATGCATGGGCAGGTCCCGAGCATTGGAAATATCGGAAGATTAAAGGTGTAGAAGACCCTGTCAAGGAAAATGGATCGTCACCAGTAATGGCGAAAAAACCAAGGAATAAGAAACAAGCCGAACCTGAAGTAGAATTTATGAAAGCATTGGATTTGGAAAGTGACATGGATAATATCTTTGCTCCTCCTAAAAATCCAAGAACACTGTTGTTGCCTGCAAATAGGGAACCCGGTAACACCACACTTCCAGAGGATTGCCATTATCAACCAGAAGACCTTGTGAAGCTATTTTTTCTTCCAAATGTTATGTGCCTTGGAAAGAGAGGAAGAAGGCATTCAGATGAAGCTGGTCAACAAGGAGAAGGGAATAACGAAACATTTGCGTCTTGGGATGATGAATGTGGGCAATTTGAAGATGGAAATGCTTTTGACGATGGAAATGCTTACGGTGATGTTGAGGACTCTACCACACTTGTCTCTCAGCCTCGTCAGGTAAATAAGATTGAAGTCGAGTATGACAAAACATCTAAGCAAGTTGATGTTCAGGCACTCAAAGAGACTCTTTGGTCATCTATGCAAGAAACACCTGAAACAAAGACATTGTCTTTTAAGCACTTATTGACATCTTTTCCAGCGGATAAGAAGCCGGCTGCTGCATCCATTGATGTCATCTCCCCACATCTTTGTTTCATTTGCGTGTTACATTTGGCTAACGAGCATGGATTGAGCATCCATGGATGTGCTAACTTGGATGACCTCACAATACACCTTCCCTTAGAAGTGGTCTAA 1989 42.63 MGETLTPNRTPGHKQRPQILSPDRPLFLGSNDDKLERAQARAARAAAIRRKPVAARQATDSTDPPCLGQEQIMELFQNCIKLASENKINQKNTWELNLIDHLCDIIKVEEENDVETNFQKASCTLEAGVRIYSMRVDSVHSEAYKVLGGISRVTLDSEQDIVDDGNTDNMPGERTTKKEKEHKLSPLTTLESSFEALNVKKFDVAFAVDPLYHQTTAQFDEGGSKGLLLNNLGVYGGCRMVFDSLEVPGKCMSCSNGHDKVDTIDISYAKDAMEQMVSNFSKKLEISPTLRAIVNMFDEDNRRPADTFSSSQNSVEPDYEAYDDNAYNEGGHDEPSTWDYINDNQASVHDEGAYEGDEELFAPVHHEENEPYASQNGEVDDKFATVDSFLFLSLGLNGKQNAWAGPEHWKYRKIKGVEDPVKENGSSPVMAKKPRNKKQAEPEVEFMKALDLESDMDNIFAPPKNPRTLLLPANREPGNTTLPEDCHYQPEDLVKLFFLPNVMCLGKRGRRHSDEAGQQGEGNNETFASWDDECGQFEDGNAFDDGNAYGDVEDSTTLVSQPRQVNKIEVEYDKTSKQVDVQALKETLWSSMQETPETKTLSFKHLLTSFPADKKPAAASIDVISPHLCFICVLHLANEHGLSIHGCANLDDLTIHLPLEVV* 663
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Artr3g12193 662 MobiDBLite consensus disorder prediction 1 15 - -
Artr3g12193 662 Pfam Condensin complex subunit 2 551 655 IPR022816 GO:0000796(InterPro)|GO:0007076(InterPro)
Artr3g12193 662 Pfam Condensin complex subunit 2 24 537 IPR022816 GO:0000796(InterPro)|GO:0007076(InterPro)
Artr3g12193 662 PIRSF Condensin-H 3 555 IPR022816 GO:0000796(InterPro)|GO:0007076(InterPro)
Artr3g12193 662 PIRSF Condensin-H 539 659 IPR022816 GO:0000796(InterPro)|GO:0007076(InterPro)
Artr3g12193 662 PANTHER CONDENSIN COMPLEX SUBUNIT 2 16 657 IPR022816 GO:0000796(InterPro)|GO:0000799(PANTHER)|GO:0003682(PANTHER)|GO:0007076(InterPro)|GO:0007076(PANTHER)
Artr3g12193 662 MobiDBLite consensus disorder prediction 420 442 - -
Artr3g12193 662 MobiDBLite consensus disorder prediction 1 30 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Artr3g12193 K06676 condensin complex subunit 2
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Event-related genes

Select Gene_1 Gene_2 Event_name
21936 Artr1g02238 Artr3g12193
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Artr Artr-Chr1:65139011 Artr3g12193 Artr-Chr3:419380384 wgd