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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Artr3g12195 ATGGCAATAAACAGGGTTGGATCATCAGGAGCATCATGTAATCCGGCAATAGTAAAGATGTTAATAACATTTATAGGAATAAGTATGGTTGGTTATTTAATAGGTCCACCTTTATATTGGCATCTTCTTGAAGCCCTTCATCGCTCTTCTGTTGCTGCTGTTTCTTGCCCTGTTTGCAACTGTGATTGTGATTCTCAACCTCTGCTTTCAATTCCTCAAGCGCTAAGCAACGGTTCCTTCACAGATTGTGCAAAGCATGATCCTGAAGTGAGTGGAGACACAGAAAAGAATTTCGTCGAGCTTCTCTCTGAAGAATTAAAGCTACGTGAAGCTGAAGCTCTAGAAAGTCAACAACGTGCTGACATGGCACTTCTCGAGGCCAAGAAGTTAACATCCCAATATCAAAAAGAAGCGGACAAGTGTAATTCAGGAATGGAAACTTGTGAAGAAGCTCGTGAAAAAGCCGAAGCAGCTTTACTAGCACAAAAACAACAAAGTGAAATGTGGGAATTAAGAGCCAAACAAAGAGGTTGGAAAGAAGGCAGTACTAAGTCTGTAAACACTGCTTGA 570 41.05 MAINRVGSSGASCNPAIVKMLITFIGISMVGYLIGPPLYWHLLEALHRSSVAAVSCPVCNCDCDSQPLLSIPQALSNGSFTDCAKHDPEVSGDTEKNFVELLSEELKLREAEALESQQRADMALLEAKKLTSQYQKEADKCNSGMETCEEAREKAEAALLAQKQQSEMWELRAKQRGWKEGSTKSVNTA* 190
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Artr3g12195 189 Coils Coil 108 128 - -
Artr3g12195 189 Pfam Protein of unknown function (DUF1068) 16 181 IPR010471 -
Artr3g12195 189 PANTHER EXPRESSED PROTEIN 12 186 - -
Artr3g12195 189 Coils Coil 145 165 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Artr3g12195 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
21937 Artr1g02239 Artr3g12195
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Artr Artr-Chr3:235987659 Artr3g12195 Artr-Chr3:419418341 dispersed
Artr Artr-Chr1:65146675 Artr3g12195 Artr-Chr3:419418341 wgd