AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Artr3g12247 ATGAAGCAATGGAGCATGAAGACTACATTGTTAATGTTACTAGCAATGTTGTATACTATAAATGGTGAAGACCCTTATAGGTTTTTTGATTGGAATGTTACTTATGGTGATATTTACCCTCTTGGAGTCAAGCAACAGGGGATATTGATTAATGGGCAGTTTCCTGGGCCACAAATCGACTCTGTTACTAATGATAATGTGATTGTTAGTATTTACAACAACTTGGATGAACCATTCCTTATTACATGGAATGGGATACAACAAAGGAGAAATTCATGGCAAGATGGAGTTTACGGCACGAATTGCCCAATCCCACCTGGCCAAAACTTTACATACATTCTTCAAGTCAAGGATCAAATTGGTAGTTTCTTCTACTTTCCGTCGCTTGGGATGCACCGGGCTGCTGGAGGGTATGGTGGCATTACAATCTCCAGTCGCCCGAGGATCCCTGTCCCATTCCCTCCACCCGCAGGAGATTTCACTATTCTGGCGGGTGATTGGTTTAAGCAAAACCACACCGATTTGAAAGCAACATTAGACGGAGGGCATGATCTTCCATTCCCTGATGGTCTCCTTATTAATGGTCGTGGATCTAACGGATTTACATTCAACGTTGATCAAGGGAAAACTTATAGGCTGAGGATATCAAACGTGGGACTTACTACATCAATCAACTTCAGGATCCAAGGCCATAAGATGTTGCTAGTAGAGACCGAAGGAACTCATACTCTTCAAAACACATACTCTTCTCTCGATATTCATTTGGGCCAATCATACTCGGTTTTGATCACTGCTGATCAACCACCGGCAAATTACTATATGGTTGTCTCAACTAGATTCACCTCTCAAGTCCTTAGTGCTACCTCCATTCTTCGTTACAGCAATTCCGGGGGATCTTTCCCAGCTCCTCCACCTGGTGGTCCCACCATCCAAATCGACTGGTCTTTGAATCAAGCCCGGTCTATTAGACAAAACTTGACAGCAAGTGGACCAAGGCCTAATCCCCAAGGGTCATACCATTATGGTATGGTTAACTTCACTAGAACCATAAGGCTCGCGAACTCTGCTCCTATTATAAATGGCAAACAGAGATACGCTGTCAACAGTGTGTCGTTTATACCAGCAGACACACCTCTAAAGATTGCCGATTATTTTAAGATCTCGGGTGTGTTTTCCATTGGAACCATTTCCGACAGCCCCAATGGTGGTGGTGGTTACCTTCAAACTTCCGTCATGGCTGCTGATTTCCGAGCATTTGCTGAAATTGTTTTTGAGAATTCAGAAGATACCGTGCAATCTTGGCACATTGATGGACACTTTTTCTTTGTCGTTGGGATGGATGGAGGGCCATGGTCAGCAGCTAGCAGAACGAGCTACAATTTAAGAGACGGGATATCTCGCTCTACAGTTCAAGTATACCCAAGATCATGGACAGCATTGTATGTACCACTAGACAATGTTGGTATGTGGAACATAAGATCTCAGAATTGGGCTAGACAATACTTAGGTCAACAATTTTACCTTCGAGTTTATTCACCGGTAAATTCATGGAGAGACGAGTACCCGATCCCAAAGAATGCCATTACTTGCGGCCGAGCAAGTGGTCGCAAGACACGTCCTTTGTAA 1626 43.67 MKQWSMKTTLLMLLAMLYTINGEDPYRFFDWNVTYGDIYPLGVKQQGILINGQFPGPQIDSVTNDNVIVSIYNNLDEPFLITWNGIQQRRNSWQDGVYGTNCPIPPGQNFTYILQVKDQIGSFFYFPSLGMHRAAGGYGGITISSRPRIPVPFPPPAGDFTILAGDWFKQNHTDLKATLDGGHDLPFPDGLLINGRGSNGFTFNVDQGKTYRLRISNVGLTTSINFRIQGHKMLLVETEGTHTLQNTYSSLDIHLGQSYSVLITADQPPANYYMVVSTRFTSQVLSATSILRYSNSGGSFPAPPPGGPTIQIDWSLNQARSIRQNLTASGPRPNPQGSYHYGMVNFTRTIRLANSAPIINGKQRYAVNSVSFIPADTPLKIADYFKISGVFSIGTISDSPNGGGGYLQTSVMAADFRAFAEIVFENSEDTVQSWHIDGHFFFVVGMDGGPWSAASRTSYNLRDGISRSTVQVYPRSWTALYVPLDNVGMWNIRSQNWARQYLGQQFYLRVYSPVNSWRDEYPIPKNAITCGRASGRKTRPL* 542
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Artr3g12247 541 Pfam Multicopper oxidase 32 146 IPR011707 GO:0005507(InterPro)
Artr3g12247 541 Gene3D - 342 538 IPR008972 -
Artr3g12247 541 FunFam Monocopper oxidase-like protein 343 540 - -
Artr3g12247 541 CDD CuRO-1-AAO-like-1 28 143 IPR034273 GO:0005507(InterPro)
Artr3g12247 541 Gene3D - 157 332 IPR008972 -
Artr3g12247 541 SUPERFAMILY Cupredoxins 153 333 IPR008972 -
Artr3g12247 541 Pfam Multicopper oxidase 159 296 IPR001117 -
Artr3g12247 541 Gene3D - 26 147 IPR008972 -
Artr3g12247 541 SUPERFAMILY Cupredoxins 343 532 IPR008972 -
Artr3g12247 541 FunFam Monocopper oxidase-like protein 157 331 - -
Artr3g12247 541 PANTHER MULTI-COPPER OXIDASE 27 507 IPR045087 GO:0016491(PANTHER)
Artr3g12247 541 SUPERFAMILY Cupredoxins 19 173 IPR008972 -
Artr3g12247 541 Pfam Multicopper oxidase 376 513 IPR011706 GO:0005507(InterPro)|GO:0016491(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Artr3g12247 K19791 iron transport multicopper oxidase
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
21941 Artr1g02258 Artr3g12247
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Artr Artr-Chr1:287247743 Artr3g12247 Artr-Chr3:421329637 dispersed
Artr Artr-Chr3:421329637 Artr6g11604 Artr-Chr6:409613898 dispersed
Artr Artr-Chr1:153868064 Artr3g12247 Artr-Chr3:421329637 transposed
Artr Artr-Chr3:9698027 Artr3g12247 Artr-Chr3:421329637 transposed
Artr Artr-Chr5:427518439 Artr3g12247 Artr-Chr3:421329637 transposed
Artr Artr-Chr7:44564944 Artr3g12247 Artr-Chr3:421329637 transposed
Artr Artr-Chr1:65559357 Artr3g12247 Artr-Chr3:421329637 wgd