AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Artr3g12293 ATGCATATAAGCGGTCACCACTCCTCCACGCTCCTCCGACGCGCCACCCGATCCTCATCCACCAGACTCCAATCATCTCTCTCATCTAAACCACCGTCACCGTCACAGTCACCGTCACGATCTTACACCACCGCATCTACAACAACCGTACGGTCATCGCGATGGAGTCACGGTGTTAATTGGAGGTCACCGGCCTCGTTGACCTCTCAGATCAGGATTGCGTCTGTTGCGTCTCCTGTGCTTGATCGATTTCATCGTTCTCTTGCTACTAGTGCCTCTGAGAATGCTTTCAGTGGGATTTTGACTGGTCTCCCTAAACCTGGAGGTGGGGAGTTTGGAAAGTTCTATAGCTTGCCTGCTCTGAATGATCCGAGAGTCGACAAGCTGCCATATTCAATTAGGATACTTCTCGAATCTGCGATCCGTAATTGTGACAATTTCCAAGTCACCAAGGAAGATGTCGAGAAAATCATTGACTGGGAGAAGAGTGCTCCAAAGCAGGTTGAAATTCCGTTCAAGCCTGCTCGTGTTCTGTTACAGGATTTTACTGGTGTGCCAGTTGTGGTAGACCTCGCAGGTATGCGTGATGCTATGAACAATCTTGGTGGGGACTCCCAGAAAATTAATCCTTTGGTTCCTGTGGATCTTGTGGTCGATCATTCAGTTCAAGTTGATGTTGCTAGGACTGAAAATGCAGTAAAAGCAAATATGGAGCTTGAATTTCAGAGAAACCAGGAGAGATTTGCTTTTCTTAAGTGGGGATCTAAAGCTTTCCAAAATATGCTTGTGGTTCCACCAGGATCTGGTATCGTGCATCAGGTTAACCTTGAATATCTTGGAAGAGTTGTTTTCAACACTGATGGCATGCTCTACCCTGATAGTGTTGTCGGAACTGATTCGCACACCACTATGATTGACGGGTTAGGTGTTGCTGGTTGGGGAGTTGGAGGAATTGAAGCTGAGGCCGCAATGCTTGGGCAGCCAATGAGCATGGTTTTGCCTGGTGTGGTTGGGTTCAAGCTATCATGGAAACTTCAGAATGGTGTAACAGCTACTGTTTTGGTGTTGACTGTCACCCAAATGTTAAGAAAGCATTGTGTTGTCGGCAAACTTGTTGAATTCCATGGTGAAGGCGTGGGTAAAATCTCACTTGCTGATAGGGCTACTATTGCTAACATGTTTCCCGAGTATGGTGCGACAATGGGTTTCTTCCCAGTGGATCATGTTACTCTACAATATCTCAAGTTAACTGGACGAAGTGATGATACGGTTGCTATGATTGAAGCATACCTACGTGCAAACAATATGTTTGTCAACTATAATGAGCCACAACAAGAAAGAGTCTACTCATCTTATCTGGAGCTAGACCTTTCAGAAGTAGAACCTTGTATTTCTGGGCCAAAGAGACCTCATGACCGAGTCACTTTGAAAGACATGAAACAAGATTGGCACTCTTGCCTTGATAATAAAGTGGGATTCAAGGGATTTGAGGTACCAAAGGAGGCACAAGACAAAGTTGCGAAATTTGATTTTCATGGACAGCCTGCAGAACTTAAGCATGGTAGTGTTGTGATCGCTGCTATAACTAGCTGCACAAATACATCAAACCCTAGTGTTATGCTTGGGGCAGGTCTTGTTGCGAAAAAGGCCTGTGAATTGGGTCTACAGGTCAAACCATGGGTTAAAACAAGTCTTGCACCAGGCTCTGGAGTTGTTACAAAATATTTGCTCCAAAGTGGGTTGCAGAAGTATTTGAACGAGCAAGGGTTCAACATTGTTGGATATGGGTGCACGACATGTATTGGCAATTCAGGAGATTTGGATGCATCAGTTGGTGCTGCCATTACTGACAATGATATCATTGCATCAGCAGTTCTCTCTGGTAATCGAAACTTTGAAGGACGTGTTCATCCCTTGACAAGGGCAAACTATCTTGCATCACCTCCTTTGGTTGTTGCCTATGCTCTAGCTGGCACGGTTGATATCGACTTTGACAAAGAACCAATTGGAGTTGGAAAAGATGGAAAGGAAGTTTATTTCAGGGATATCTGGCCAAGTACCGAAGAAATTGCAGAGGCTGTTCAATCAAGTGTTCTGCCTGACATGTTTAAGAGTACTTATAAATCCATCACTGAGGGAAACCCCATGTGGAATGACCTATCAGTTCCAGAATCCAAACTATACACATGGGACCAAAATTCTACCTACATTCACGAGCCACCATATTTCAATAACATGACAATGGACCCACCTGGGCCCCACGGTGTGAAGGACGCCTATTGCTTACTCAACTTTGGTGACAGTATCACAACAGATCACATTTCTCCTGCCGGAAGCATTCACAAAGACAGTCCTGCTGCAAAGTTTCTTCTTGACCGTGGTGTTGACCACAAGAGCTTTAACTCTTATGGTAGTCGAAGAGGTAATGATGAAATTATGGCAAGGGGTACTTTTGCCAATATCCGCCTTGTCAACAAGCTCTTGAATGGAGAAGTTGGCCCAAAGACCGTGCATATTCCCTCCGGAGAGAAACTCTCGGTGTTTGATGCAGCATCAAAGTACAAGGCAGCTGGTCAGGATACAATTGTGTTGGCTGGAGCAGAGTATGGAAGTGGAAGCTCTAGAGATTGGGCTGCAAAGGGTCCCATGTTATTGGGGGTTAAAGCGGTAATTGCCAAAAGTTTCGAGAGGATCCATCGCAGTAACTTAGTAGGAATGGGCATTATACCACTTTGCTTCAAAGCTGGTGAAGATGCTGACACGCTACAGCTGACTGGTCATGAACGATACACCATTGACCTTCCAAGCAACATTAGTGAGATCCGACCCGGTCAAGATGTCAAGGTCACAACCGACACTGGAAAATCTTTCACGTGTACTGCCCGCTTTGATACTCAGGTGGAATTGGAGTATTTCAACCATGGTGGCATCCTTCCATATGTTATCCGACAACTAGCTGCAAAAAAGTGA 2970 45.25 MHISGHHSSTLLRRATRSSSTRLQSSLSSKPPSPSQSPSRSYTTASTTTVRSSRWSHGVNWRSPASLTSQIRIASVASPVLDRFHRSLATSASENAFSGILTGLPKPGGGEFGKFYSLPALNDPRVDKLPYSIRILLESAIRNCDNFQVTKEDVEKIIDWEKSAPKQVEIPFKPARVLLQDFTGVPVVVDLAGMRDAMNNLGGDSQKINPLVPVDLVVDHSVQVDVARTENAVKANMELEFQRNQERFAFLKWGSKAFQNMLVVPPGSGIVHQVNLEYLGRVVFNTDGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSWKLQNGVTATVLVLTVTQMLRKHCVVGKLVEFHGEGVGKISLADRATIANMFPEYGATMGFFPVDHVTLQYLKLTGRSDDTVAMIEAYLRANNMFVNYNEPQQERVYSSYLELDLSEVEPCISGPKRPHDRVTLKDMKQDWHSCLDNKVGFKGFEVPKEAQDKVAKFDFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFNIVGYGCTTCIGNSGDLDASVGAAITDNDIIASAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPIGVGKDGKEVYFRDIWPSTEEIAEAVQSSVLPDMFKSTYKSITEGNPMWNDLSVPESKLYTWDQNSTYIHEPPYFNNMTMDPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKFLLDRGVDHKSFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTVHIPSGEKLSVFDAASKYKAAGQDTIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADTLQLTGHERYTIDLPSNISEIRPGQDVKVTTDTGKSFTCTARFDTQVELEYFNHGGILPYVIRQLAAKK* 990
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Artr3g12293 989 Gene3D Aconitase, domain 3 463 686 IPR015931 -
Artr3g12293 989 CDD AcnA-IRP-Swivel 764 934 IPR044137 -
Artr3g12293 989 Gene3D Aconitase, domain 3 96 462 IPR015931 -
Artr3g12293 989 FunFam Aconitate hydratase 751 987 - -
Artr3g12293 989 SUPERFAMILY LeuD-IlvD-like 727 985 - -
Artr3g12293 989 MobiDBLite consensus disorder prediction 1 49 - -
Artr3g12293 989 FunFam cytoplasmic aconitate hydratase 463 686 - -
Artr3g12293 989 ProSitePatterns Aconitase family signature 2. 589 602 IPR018136 -
Artr3g12293 989 Gene3D - 687 748 - -
Artr3g12293 989 PRINTS Aconitase family signature 261 269 IPR001030 -
Artr3g12293 989 PRINTS Aconitase family signature 237 250 IPR001030 -
Artr3g12293 989 PRINTS Aconitase family signature 527 538 IPR001030 -
Artr3g12293 989 PRINTS Aconitase family signature 290 303 IPR001030 -
Artr3g12293 989 PRINTS Aconitase family signature 462 476 IPR001030 -
Artr3g12293 989 PRINTS Aconitase family signature 304 319 IPR001030 -
Artr3g12293 989 PRINTS Aconitase family signature 366 379 IPR001030 -
Artr3g12293 989 PRINTS Aconitase family signature 380 393 IPR001030 -
Artr3g12293 989 PRINTS Aconitase family signature 589 602 IPR001030 -
Artr3g12293 989 FunFam Aconitate hydratase 95 462 - -
Artr3g12293 989 Gene3D Aconitase, domain 4 751 987 IPR015928 -
Artr3g12293 989 Pfam Aconitase C-terminal domain 787 915 IPR000573 -
Artr3g12293 989 SUPERFAMILY Aconitase iron-sulfur domain 109 723 IPR036008 -
Artr3g12293 989 ProSitePatterns Aconitase family signature 1. 523 539 IPR018136 -
Artr3g12293 989 NCBIfam aconitate hydratase AcnA 113 985 IPR006249 -
Artr3g12293 989 CDD AcnA-IRP 176 660 - -
Artr3g12293 989 PANTHER ACONITASE-IRON-RESPONSIVE ELEMENT FAMILY MEMBER 93 986 IPR006249 GO:0003994(PANTHER)|GO:0005739(PANTHER)|GO:0005829(PANTHER)|GO:0006099(PANTHER)|GO:0006101(PANTHER)|GO:0030350(PANTHER)|GO:0051539(PANTHER)
Artr3g12293 989 Pfam Aconitase family (aconitate hydratase) 155 658 IPR001030 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Artr3g12293 K01681 aconitate hydratase [EC:4.2.1.3]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Artr Artr-Chr1:29680680 Artr3g12293 Artr-Chr3:422377734 dispersed
Artr Artr-Chr1:62332099 Artr3g12293 Artr-Chr3:422377734 dispersed
Artr Artr-Chr1:70274653 Artr3g12293 Artr-Chr3:422377734 dispersed
Artr Artr-Chr1:70276029 Artr3g12293 Artr-Chr3:422377734 dispersed
Artr Artr-Chr1:416009627 Artr3g12293 Artr-Chr3:422377734 dispersed
Artr Artr-Chr3:381579867 Artr3g12293 Artr-Chr3:422377734 dispersed
Artr Artr-Chr3:422377734 Artr6g11717 Artr-Chr6:413057081 dispersed