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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Artr3g12538 ATGTTATTTAGTTTCACACCATTTAAGGGCATGAAAACAAAAATCGTTCCATACTATATGAACGGGAATCCATCAAGTCTTTTTTGTATCCTGCCACGAGATGATTCTTCACGCTTTTACCCTCCTGGCAGTACTCCTGTTTACCTTAATGTGTACGATATATCTACCATCAACTCTTGTATATCATGGACAGGGATTGGTGCCTTTCACACGGGTCTAGAAGTTCATGGTGTGGAATATGGTTTTGGATGTCACCAAGAATCAGAAAGTGGAGTCTTTCAGATTGAGCCTAAAAAATGCCCCGGGTTCAAATTTAGGGAGTCGATTTTAATGGGTACCACAAACTTAACCCCAAGCCAAGTTCAAAGATTCATTGAGCTGCAATCTGATAACTATTATGGTGACACATACCACTTATTTGGGAAGAATTGCAATCATTTTTGTGAAGATATGTGTTACAAATTAACCGGGAACAAAATCCCCAGTTGGGTCAACCGTCTAGCCAGGATAGGTTCATGTTGTCGTTGCATACTCCCAGTTTCCATAAAGGGTTCTGCTGTTAGAAATGAATCAAACTCTCAAGACTATGAAAAGAAGAGTTTAAGAAGCTCGTTTAGTTGTTTTGCATCATTTTCATCTCATAATAAGTTGAGAAAAGTGTCGATATCGTCATTGTGTAGACATTCACTCTACAAAGGATGTCTTCCCCCATGGGAGTTGGAAGTAGACTCGCAAAGGCTATGTGACGATGAGGATGAGTAA 762 39.63 MLFSFTPFKGMKTKIVPYYMNGNPSSLFCILPRDDSSRFYPPGSTPVYLNVYDISTINSCISWTGIGAFHTGLEVHGVEYGFGCHQESESGVFQIEPKKCPGFKFRESILMGTTNLTPSQVQRFIELQSDNYYGDTYHLFGKNCNHFCEDMCYKLTGNKIPSWVNRLARIGSCCRCILPVSIKGSAVRNESNSQDYEKKSLRSSFSCFASFSSHNKLRKVSISSLCRHSLYKGCLPPWELEVDSQRLCDDEDE* 254
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Artr3g12538 253 PANTHER DESUMOYLATING ISOPEPTIDASE 43 204 IPR008580 GO:0008233(InterPro)|GO:0016579(PANTHER)|GO:0070646(PANTHER)|GO:0101005(PANTHER)
Artr3g12538 253 ProSiteProfiles PPPDE domain profile. 45 182 IPR008580 GO:0008233(InterPro)
Artr3g12538 253 SMART DUF862-2a 45 183 IPR008580 GO:0008233(InterPro)
Artr3g12538 253 Gene3D PPPDE domains 40 198 IPR042266 -
Artr3g12538 253 Pfam PPPDE putative peptidase domain 46 179 IPR008580 GO:0008233(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Artr3g12538 K22763 deubiquitinase DESI2 [EC:3.4.19.12]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Artr Artr-Chr3:430256223 Artr6g02705 Artr-Chr6:81072829 dispersed