AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Artr3g13006 ATGTCCTCTTTTTCAGTCAAGTTTCTTGCACCAACTTCATTTCTTAACCCTAAAACAACAACCAACTTTAACTCCAAGAAACTCTATGCAACTCCACAACAAACCGCAGTTCCAGCTTCATCTCCGGTTCCAGCAACAGATATCACGTTAGAAAGACTAGAACCTAGAGTTGAAAAAAAAGATGGATATTATATACTTAAGGAAAAGTTTAGACAAGGTATTAATCCACAAGAAAAAGTTAAGATTGCTAGTGAACCAATGAAACTATTTATGGAAAATGGTATTGAAGATCTTGCTAAGATACCTTTTGAAGACCTTGATAAGTCGAAAGATACTAAAGATGATGTTGATGTTAGACTTAAATGGCTTGGTTTGTTTCATCGTAGGAAACATCAATACGGTCGGTTTATGATGAGGTTGAAGCTCCCAAATGGCGTTACAACAAGTGCACAAACTCGATACTTAGCTAGTGTCATTAAGGAGTATGGGGAGCTAGGCTGTGCCGATGTTACCACACGCCAAAACTGGCAAATTCGTGGAGTTACATTACCTGATGTACCCGCAATCCTAAAAGGTCTTGATGAAGTCGGTTTAACCAGTCTTCAGAGTGGTATGGACAATGTTAGGAACCCTGTTGGGAACCCACTTGCCGGTATTGATCCTCATGAAATTGTGGACACAAGGGTTTACACGAATTTGTTATCGCAATTTATCACTGCTAATTCTCGGGGGAATCCTGAATTCACCAACTTGCCGAGGAAATGGAATGTTTGCGTGATTGGTTCACATGATCTTTATGAGCATCCCCATATCAATGATCTAGCCTATATGCCAGCTACAAAGAATGGTAAGTTTGGGTTCAACTTGTTGGTGGGTGGATTCTTTAGTCCCAAAAGATGTGCAGAGGCTATTCCTCTTGATGCGTGGGTCCCAGCAGAAAATGTTGTCCCGGTTTGTGGGGCGATTCTTGAGGCTTATCGTGATCTTGGTACAAGAGGGAACAGGCAAAAGACTAGAATGATGTGGTTGATCGATGAACTCGGTGTAGAAGGGTTTCGATCTGAAGTGGTAAAGAGAATGCCTGAACAAGCATTGGAGAGGGCTTCTTCCGAAGATCTTGTTGATCCAAAATGGGAAAGAAGGGATTACTTCGGTGTGCACCCACAGAAACAAGAAGGCCTTAGCTTTGTGGGCATTCACATTCCTGTGGGCCGGGTCCAAGCCGATGACATGGACCAATTAGCCCGATTAGCCGATGAATACGGTTCAGGTGAGCTCAGGCTAACCGTGGAACAAAACGTCATAATCCCAAACATACCAAACTCAAAAGTCGAAGCTTTACTCGACGAGCCTCTTCTAAAAGAGAAGTTTTTACCCCAGCCACCTATTTTAATGAAAGGGTTAGTAGCTTGCACGGGTAACCAATTTTGTGGACAAGCCATAATTGAGACAAAAGCCCGTGCTTTGAAGGTTGCAGAAGAAGTTGAGAAACTTGTTTCCGTGACCTATCCAGTGCGGATGCACTGGACAGGCTGCCCTAACACGTGTGGCCAGGTTCAAGTGGCGGATATAGGATTTATGGGATGTAAGACTAGGGACAAAAATGGAAACGTAGTGGAAGGAGCCGATGTTTACTTGGGGGGCAGAATTGGAAGTGACTCACATTTGGGGGATATCTATAAAAAGGCTGTCCCGTGTGAGGACTTGGTGCCTTTAGTTGTGGACATCATGGTCGAAAAATTTGGTGCTGTTCTCTGA 1758 43.34 MSSFSVKFLAPTSFLNPKTTTNFNSKKLYATPQQTAVPASSPVPATDITLERLEPRVEKKDGYYILKEKFRQGINPQEKVKIASEPMKLFMENGIEDLAKIPFEDLDKSKDTKDDVDVRLKWLGLFHRRKHQYGRFMMRLKLPNGVTTSAQTRYLASVIKEYGELGCADVTTRQNWQIRGVTLPDVPAILKGLDEVGLTSLQSGMDNVRNPVGNPLAGIDPHEIVDTRVYTNLLSQFITANSRGNPEFTNLPRKWNVCVIGSHDLYEHPHINDLAYMPATKNGKFGFNLLVGGFFSPKRCAEAIPLDAWVPAENVVPVCGAILEAYRDLGTRGNRQKTRMMWLIDELGVEGFRSEVVKRMPEQALERASSEDLVDPKWERRDYFGVHPQKQEGLSFVGIHIPVGRVQADDMDQLARLADEYGSGELRLTVEQNVIIPNIPNSKVEALLDEPLLKEKFLPQPPILMKGLVACTGNQFCGQAIIETKARALKVAEEVEKLVSVTYPVRMHWTGCPNTCGQVQVADIGFMGCKTRDKNGNVVEGADVYLGGRIGSDSHLGDIYKKAVPCEDLVPLVVDIMVEKFGAVL* 586
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Artr3g13006 585 SUPERFAMILY Nitrite-Sulfite reductase N-terminal domain-like 341 477 IPR036136 GO:0016491(InterPro)
Artr3g13006 585 PRINTS Sirohaem Fe-binding site signature 466 484 IPR006066 GO:0016491(InterPro)|GO:0020037(InterPro)|GO:0051536(InterPro)
Artr3g13006 585 PRINTS Sirohaem Fe-binding site signature 510 528 IPR006066 GO:0016491(InterPro)|GO:0020037(InterPro)|GO:0051536(InterPro)
Artr3g13006 585 SUPERFAMILY Nitrite-Sulfite reductase N-terminal domain-like 53 204 IPR036136 GO:0016491(InterPro)
Artr3g13006 585 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 466 577 IPR045854 -
Artr3g13006 585 Gene3D - 73 454 - -
Artr3g13006 585 PANTHER FERREDOXIN--NITRITE REDUCTASE, CHLOROPLASTIC 4 584 IPR051329 -
Artr3g13006 585 Pfam Nitrite and sulphite reductase 4Fe-4S domain 205 362 IPR006067 GO:0016491(InterPro)|GO:0020037(InterPro)|GO:0051536(InterPro)
Artr3g13006 585 Pfam Nitrite-Sulfite reductase ferredoxin-like half domain 387 451 IPR005117 GO:0016491(InterPro)
Artr3g13006 585 Pfam Nitrite-Sulfite reductase ferredoxin-like half domain 129 196 IPR005117 GO:0016491(InterPro)
Artr3g13006 585 Gene3D Sulfite Reductase Hemoprotein, domain 1 197 382 IPR045854 -
Artr3g13006 585 Pfam Nitrite and sulphite reductase 4Fe-4S domain 468 577 IPR006067 GO:0016491(InterPro)|GO:0020037(InterPro)|GO:0051536(InterPro)
Artr3g13006 585 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 205 362 IPR045854 -
Artr3g13006 585 Gene3D Sulfite Reductase Hemoprotein, domain 1 462 584 IPR045854 -
Artr3g13006 585 ProSitePatterns Nitrite and sulfite reductases iron-sulfur-siroheme-binding site. 510 526 IPR006066 GO:0016491(InterPro)|GO:0020037(InterPro)|GO:0051536(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Artr3g13006 K00366 ferredoxin-nitrite reductase [EC:1.7.7.1]