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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Artr3g13029 ATGGCGATTAATGTATCATCATCATCATCTTCGTGTGCTACATTATTACCTCCTCCTCATTGTTGTTATTCCACTAATATTCGACCTGCTTCTTCTTCTTCCTTGTTTTTTGCAAACACTAATAATAATTATTCTTTAAATGTTTCATCGATTAAACGCCGATCCGATCTACGTGTCATGTCTTCTATGCGACGACCCTTAAAAGCAACAGTAGTGACCGGACAGTCATGGAACACATCAGTTCTCGACAGCAAAACACCAGTACTAGTTGAGTTCTATGCCAGTTGGTGTGGACCATGCCAGATGGTGCACCGTGTGATTGATGAAATTGCAGGCGAGTATGCTGGTAAGGTCAAGTGTTTTGTGCTGAATGCTGACCAAGACCCACTAATCGCTGAAGAATATGACATTAAGGCTGTACCCATTGTGCTGTTATTCAAGAACGGTCAGAAATGTGAGTCGGTGGTTGGAACCATGCCTAAAGAATTCTACGTGGCTGCTATCGAAAGGGTCTTGTCATCTTCATCTTGA 531 42.18 MAINVSSSSSSCATLLPPPHCCYSTNIRPASSSSLFFANTNNNYSLNVSSIKRRSDLRVMSSMRRPLKATVVTGQSWNTSVLDSKTPVLVEFYASWCGPCQMVHRVIDEIAGEYAGKVKCFVLNADQDPLIAEEYDIKAVPIVLLFKNGQKCESVVGTMPKEFYVAAIERVLSSSS* 177
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Artr3g13029 176 Pfam Thioredoxin 70 168 IPR013766 -
Artr3g13029 176 ProSiteProfiles Thioredoxin domain profile. 63 173 IPR013766 -
Artr3g13029 176 PRINTS Thioredoxin family signature 88 96 - -
Artr3g13029 176 PRINTS Thioredoxin family signature 136 147 - -
Artr3g13029 176 PRINTS Thioredoxin family signature 96 105 - -
Artr3g13029 176 CDD TRX-family 80 169 - -
Artr3g13029 176 PANTHER GEO12009P1 50 172 - GO:0005737(PANTHER)|GO:0015035(PANTHER)
Artr3g13029 176 SUPERFAMILY Thioredoxin-like 70 174 IPR036249 -
Artr3g13029 176 FunFam Thioredoxin 63 175 - -
Artr3g13029 176 ProSitePatterns Thioredoxin family active site. 89 107 IPR017937 -
Artr3g13029 176 Gene3D Glutaredoxin 69 175 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Artr3g13029 K03671 thioredoxin
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Event-related genes

Select Gene_1 Gene_2 Event_name
22445 Artr2g05298 Artr3g13029
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Artr Artr-Chr3:450757765 Artr4g06184 Artr-Chr4:212328755 dispersed
Artr Artr-Chr6:437889830 Artr3g13029 Artr-Chr3:450757765 transposed
Artr Artr-Chr9:251609206 Artr3g13029 Artr-Chr3:450757765 transposed
Artr Artr-Chr2:171323160 Artr3g13029 Artr-Chr3:450757765 wgd